Gene detail

Detail information of GWHGAAZE009372

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275617.3	PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
Swissprot	tr\|P92974\|UBE12_ARATH	Ubiquitin-activating enzyme E1 2
trEMBL	tr\|M7YXF4\|M7YXF4_TRIUA	Uncharacterized protein {ECO:0000313\|EnsemblPlants:TRIUR3_11088-P1}
TAIR10	AT5G06460.1	ubiquitin activating enzyme 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	108934553	108948626	-
GWHAAZE00000002	mRNA	108934553	108948626	-
GWHAAZE00000002	exon	108948374	108948626	-
GWHAAZE00000002	exon	108948077	108948301	-
GWHAAZE00000002	exon	108942473	108942690	-
GWHAAZE00000002	exon	108938161	108938955	-
GWHAAZE00000002	exon	108937330	108937543	-
GWHAAZE00000002	exon	108936880	108937132	-
GWHAAZE00000002	exon	108935816	108936248	-
GWHAAZE00000002	exon	108934553	108935149	-
GWHAAZE00000002	CDS	108948374	108948626	-
GWHAAZE00000002	CDS	108948077	108948301	-
GWHAAZE00000002	CDS	108942473	108942690	-
GWHAAZE00000002	CDS	108938161	108938955	-
GWHAAZE00000002	CDS	108937330	108937543	-
GWHAAZE00000002	CDS	108936880	108937132	-
GWHAAZE00000002	CDS	108935816	108936248	-
GWHAAZE00000002	CDS	108934553	108935149	-

Transcript Sequence
>GWHTAAZE009382 ATGACGCTGTTAACGACGCTAAAGTTAGGGTTAGGGTTATGGTTTTTAGTGATAGCTCCGATCCTTTTCGGAATTTTGTATGCAAGTTCATCAGATCTCGATTACTTGGATATATTTTTGTTGTTGCTCATTTCGATGGGGTGTTGTGGGGTTTTCAGTTGCTTGTTGCACTATATGCTTCCTAGGAAGAGACCAGCTCAAGTTGAGGTTGTGGACGGCGATAATAACAGCAGTAGCACTAAGCATCGGATCGATAGCAAGAAGGGCGGCGGATATATTAACAGTAACAGCGCAATTGGGATCAGTAGTAGCGCTGTGGAACCTACGCTGCTAAATATGGCTCTTGGTGATGGCAATTCTTACGACATCGACGAGGATCTTCACAGTAGACAGCTGGCGGTGTATGGTCGAGACGATGAGGCTGCTCTTTGCCTCGAATGTCCTTGTCTCGGGATGCAGGGCCTCGGTGCTGAAATTGCTAAGAATCTCGTACTAGCTGGTGTCAAGTCGGTCACACTGCACGATGAAGGGACGGTAGAGTTGTGGGATTTGTCTGGTAATTTCATTTTTTCAGAGAATGATGTTGGAAAGAACAGGGCACTCGCATCTGTACAGAAGATGCAGGAGCTCAACAATGCAGTGCTCGTCTCTAGCTTAACAACAAAATTGACTAAAGAACAACTTTCTGATTTCCAGGCTGTGGTTTTTACTAACATCGACTTAGAGACTGCAATTGCATTTGATGATTACTGTCATAGTCATCCACCTCCTATAGCATTCATCAAAGCCGAAGTAAGAGGGCTTTTTGGTAACGTCTTCTGTGATTTTGGACCCAAATTTACTGTTGTCGATGTTGATGGCGAGGAACCTCACACTGGCATTATTGCATCCATCAGTAACGATAATCCTGCACTCGTCTCTTGTGTTGATGATGAAAGGCTCGAATTTCAAGAGGGTGATCTTGTTGTGTTCTCTGAAGTTCGGGGAATGACAGAACTCAACGATGGAAAGCCCCGAAAGATAATAAATGCAAGGCCCTACTCTATCACCCTTGAAGAGGACACTACTAATTTCGGTGCATATGAGAGAGGTGGTATTGTCACTCAGGTGAAGCAGCCCAAGACACTGAATTTCAAGCCATTGAGAGAAGCACTCAAAGAACCTGGTGATTTTCTGCTGAGTGATTTCTCCAAGTTTGACCGACCTCCTCTCTTGCACTTGGCATTCCAAGCGCTTGACAAGTTCTTGTCTGAATTGGGACGTTTCCCGGTTGCTGGTTTGGAAGATGATGCGCAGAAGCTTATTTCTATAGCCAGTAATCTCAATGAGAGCTTGGGTGATGGCAAACTGGAAGATATTAACTCGAAAGTTCTACGGCACTTTGCCTTTGGTGCCCGTGCTGTACTGAATCCTATGGCTGCAATGTTTGGTGGTATTGTTGGTCAGGAGGTTATGAAGGCATGCTCTGGAAAGTTCCATCCACTTTTTCAGACTAACGCCACTTTTTTCTTTGTTAATTCTTCCAATTATTCTGCAGTTCTTCTACTTCACTCGGTTGAGTCACTTCCCACTGAGGCAGTAGAACCAACCGAATTGAGACCATTGAACAGCCGTTATGATGCACAAATTTCAGTGTTTGGGTCTAAACTTCAGAAAAAACTGGAAGATGCTCAGGTTTTTGTTGTTGGATCGGGTGCACTGGGCTCGCTGCAGAATCGTGTGGGCCCTGAGACTGAGAACGTGTTTCACGATACTTTCTGGGAGAATCTTAGCGTTGTGATTAATGCTCTGGACAACATCAATGCCCGTTTGTACGTTGATCAGAGATGCTTGTATTTCCAGAAGCCGCTTCTAGAGTCTGGAACATTAGGTGCCAAGTGCAACACTCAGATGGTCATTCCTCATCTGACAGAAAACTACGGTGCCTCTAGGGACCCACCAGAGAAACAAGCCCCCATGTTTGAAGATTATTTTTCTAATCGTGTGAAGCAGTTGATTTTTACTTTCCCTGAAGATGCTGCAACAAGTACTGGGGCTCCATTTTGGTCGGCTCCCAAGCGCTTCCCCCAACCACTAAATTTCTCTTCTGCTGATCTGAGCCACCTCCATTTTATTATGTCTGCATCCATTTTGCGTGCTGAGACATTTGGCATCCCAATCCCTGATTGGGCTAAGAACCCTAAGAAGTTGTCCGAGGCTGTTGATAAAGTGATGATCCCCGATTTTCAACCAAAGAAAGGTGTCAAAATTGTGACTGACGATAAGGCTACTAACCTCTCTAGTGCTTCTATAGATGACAGTGCAGTTATCAATGAACTAATCATGAAATTAGAGCAGTGTCGGAAGGTTTTGCCACCTGGGTACAAGATGAAACCAATTCAGTTTGAGAAGGACGATGACACAAATTACCACATGGACCTGATAGCGGCACTTGCTAACATGAGGGCAAGGAATTACAGAATTCCCGAAGTTGACAGGCTGAAAGCCAAATTCATTGCTGGAAGAATCATTCCAGCAATTGCAACAGCCACAGCAATGGCCACGGGTCTTGTCTGCCTGGAACTATACAAGGTTCTTGACGGAGACCACAAAGTCGAGGACTACCGTAACACCTTTGCAAACCTAGCCCTCCCTCTCTTCTCCATGGCCGAGCCAGTACCGCCCAAGGTGATCAAGCACAAGGACATGAGCTGGACTGTGTGGGACCGTTGGATTGTTAAAGACAATCCAACATTGAGGGAGCTTCTGCAGTGGCTTGCAAACAAGGGGCTGAACGCGTATAGCATTTCTTGTGGGAGTTGCCTGCTGTACAACAGCATGTTTCCAAGGCACAAGGAGAGGATGGACAAGAAGATGGTTGATTTGGCGAGGGATGTGGCTAAGTTGGAGCTGCCGCCTTATCGTCGGCACTTCGATGTTGTGGTGGCTTGCGAGGATGATGAAGATAATGATATTGACATCCCTCAGATTTCCATTTACTTCCGTTGA

Network for GWHGAAZE009372

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	129	499	3.90E-25
PF16190.6	E1_FCCH	301	372	4.80E-26
PF16191.6	E1_4HB	373	442	3.30E-23
PF00899.22	ThiF	571	889	5.80E-30
PF10585.10	UBA_e1_thiolCys	653	830	3.80E-56
PF09358.11	E1_UFD	901	990	5.10E-22

Protein Sequence

>GWHPAAZE009377
MTLLTTLKLGLGLWFLVIAPILFGILYASSSDLDYLDIFLLLLISMGCCGVFSCLLHYMLPRKRPAQVEVVDGDNNSSSTKHRIDSKKGGGYINSNSAIGISSSAVEPTLLNMALGDGNSYDIDEDLHSRQLAVYGRDDEAALCLECPCLGMQGLGAEIAKNLVLAGVKSVTLHDEGTVELWDLSGNFIFSENDVGKNRALASVQKMQELNNAVLVSSLTTKLTKEQLSDFQAVVFTNIDLETAIAFDDYCHSHPPPIAFIKAEVRGLFGNVFCDFGPKFTVVDVDGEEPHTGIIASISNDNPALVSCVDDERLEFQEGDLVVFSEVRGMTELNDGKPRKIINARPYSITLEEDTTNFGAYERGGIVTQVKQPKTLNFKPLREALKEPGDFLLSDFSKFDRPPLLHLAFQALDKFLSELGRFPVAGLEDDAQKLISIASNLNESLGDGKLEDINSKVLRHFAFGARAVLNPMAAMFGGIVGQEVMKACSGKFHPLFQTNATFFFVNSSNYSAVLLLHSVESLPTEAVEPTELRPLNSRYDAQISVFGSKLQKKLEDAQVFVVGSGALGSLQNRVGPETENVFHDTFWENLSVVINALDNINARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPQPLNFSSADLSHLHFIMSASILRAETFGIPIPDWAKNPKKLSEAVDKVMIPDFQPKKGVKIVTDDKATNLSSASIDDSAVINELIMKLEQCRKVLPPGYKMKPIQFEKDDDTNYHMDLIAALANMRARNYRIPEVDRLKAKFIAGRIIPAIATATAMATGLVCLELYKVLDGDHKVEDYRNTFANLALPLFSMAEPVPPKVIKHKDMSWTVWDRWIVKDNPTLRELLQWLANKGLNAYSISCGSCLLYNSMFPRHKERMDKKMVDLARDVAKLELPPYRRHFDVVVACEDDEDNDIDIPQISIYFR

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
K03178	UBE1, UBA1	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0006464	biological_process	cellular protein modification process
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.374
	SRR3591706	second leaf	34.250
	SRR3591707	mature leaf	46.391
	SRR3591708	Shoot apex	32.482
	SRR3591709	Stem	67.064
	SRR3591710	White floral bud	59.220
	SRR3591711	White flower	87.558
	SRR3591712	Green floral bud	42.642
	SRR3591713	Yellow flower	55.892
SRP173429	SRR8316895	Juvenile bud stage	30.440
	SRR8316896	Juvenile bud stage	42.786
	SRR8316897	Juvenile bud stage	19.776
	SRR8316894	Third green stage	16.705
	SRR8316900	Third green stage	44.838
	SRR8316901	Third green stage	44.267
	SRR8316898	Complete white stage	24.561
	SRR8316899	Complete white stage	60.914
	SRR8316903	Complete white stage	57.097
	SRR8316902	Silver flowering stage	34.827
	SRR8316904	Silver flowering stage	40.829
	SRR8316905	Silver flowering stage	18.604
	SRR8316906	Gold flowering stage	67.636
	SRR8316907	Gold flowering stage	65.258
	SRR8316908	Gold flowering stage	74.736
SRP132670	SRR6706286	Control	49.671
	SRR6706287	Light intensity 50%	55.341
	SRR6706288	Light intensity 20%	53.144
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.112
	CNS0095593	Slightly white alabastrum(diploid) 2	37.312
	CNS0095594	Slightly white alabastrum(diploid) 3	30.448
	CNS0095595	Whole white alabastrum(diploid) 2	31.352
	CNS0095596	Whole white alabastrum(diploid) 3	20.920
	CNS0095597	Whole white alabastrum(diploid) 4	23.762
	CNS0095598	Silvery flower (diploied) 1	37.417
	CNS0095599	Silvery flower (diploied) 2	38.016
	CNS0095600	Silvery flower (diploied) 3	87.615
	CNS0095601	Golden flower (diploid) 1	38.806
	CNS0095602	Golden flower (diploid) 2	84.161
	CNS0095603	Golden flower (diploid) 3	77.683
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.689
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.489
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.577
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.759
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.429
	CNS0095610	Silvery flower (tetraploid) 1	94.144
	CNS0095611	Silvery flower (tetraploid) 2	88.404
	CNS0095612	Silvery flower (tetraploid) 3	60.995
	CNS0095613	Golden flower (tetraploid) 1	43.054
	CNS0095614	Golden flower (tetraploid) 2	71.383
	CNS0095615	Golden flower (tetraploid) 3	51.207
CRA001975	CRR073297	Stem 1	45.684
	CRR073298	Stem 2	45.355
	CRR073299	Stem 3	51.206
	CRR073300	Leaf 1	61.804
	CRR073301	Leaf 2	62.004
	CRR073302	Leaf 3	53.034
	CRR073303	Juvenile bud 1	72.860
	CRR073304	Juvenile bud 2	71.632
	CRR073305	Juvenile bud 3	107.138
	CRR073306	Third green 1	89.730
	CRR073307	Third green 2	73.806
	CRR073308	Third green 3	93.270
	CRR073309	Second white 1	124.004
	CRR073310	Second white 2	93.524
	CRR073311	Second white 3	106.411
	CRR073312	Silver flowering 1	92.201
	CRR073313	Silver flowering 2	113.208
	CRR073314	Silver flowering 3	90.186
	CRR073315	Gold flowering 1	42.398
	CRR073316	Gold flowering 2	60.465
	CRR073317	Gold flowering 3	61.583
	CRR073318	Tawny withering 1	63.659
	CRR073319	Tawny withering 2	61.516
	CRR073320	Tawny withering 3	61.372