Detail information of GWHGAAZE009402


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275192.11.3752E-141spliceosomal protein [Solanum tuberosum]
Swissprottr|O22922|RU2B1_ARATH1E-123U2 small nuclear ribonucleoprotein B''
trEMBLtr|Q41499|Q41499_SOLTU5E-142Spliceosomal protein {ECO:0000313|EMBL:AAA33847.1}
TAIR10AT2G30260.14E-83U2 small nuclear ribonucleoprotein B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene109501019109509437-
GWHAAZE00000002mRNA109501019109509437-
GWHAAZE00000002exon109509365109509437-
GWHAAZE00000002exon109502701109502873-
GWHAAZE00000002exon109502413109502506-
GWHAAZE00000002exon109501737109501819-
GWHAAZE00000002exon109501019109501300-
GWHAAZE00000002CDS109509365109509437-
GWHAAZE00000002CDS109502701109502873-
GWHAAZE00000002CDS109502413109502506-
GWHAAZE00000002CDS109501737109501819-
GWHAAZE00000002CDS109501019109501300-
Transcript Sequence

Network for GWHGAAZE009402

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_112822.10E-08
PF00076.23RRM_11622219.60E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11094SNRPB2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.675
SRR3591706second leaf31.911
SRR3591707mature leaf22.925
SRR3591708Shoot apex61.428
SRR3591709Stem26.732
SRR3591710White floral bud26.032
SRR3591711White flower30.435
SRR3591712Green floral bud42.382
SRR3591713Yellow flower21.976
SRP173429 SRR8316895Juvenile bud stage 36.966
SRR8316896Juvenile bud stage 50.757
SRR8316897Juvenile bud stage 25.234
SRR8316894Third green stage 18.553
SRR8316900Third green stage 45.641
SRR8316901Third green stage 44.039
SRR8316898Complete white stage 11.432
SRR8316899Complete white stage 46.038
SRR8316903Complete white stage 17.498
SRR8316902Silver flowering stage12.486
SRR8316904Silver flowering stage13.146
SRR8316905Silver flowering stage6.318
SRR8316906Gold flowering stage 18.438
SRR8316907Gold flowering stage 25.887
SRR8316908Gold flowering stage 21.023
SRP132670SRR6706286Control47.236
SRR6706287Light intensity 50%49.345
SRR6706288Light intensity 20%52.639
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.978
CNS0095593Slightly white alabastrum(diploid) 251.875
CNS0095594Slightly white alabastrum(diploid) 347.098
CNS0095595Whole white alabastrum(diploid) 240.638
CNS0095596Whole white alabastrum(diploid) 339.723
CNS0095597Whole white alabastrum(diploid) 434.027
CNS0095598Silvery flower (diploied) 134.899
CNS0095599Silvery flower (diploied) 225.264
CNS0095600Silvery flower (diploied) 328.928
CNS0095601Golden flower (diploid) 131.817
CNS0095602Golden flower (diploid) 229.503
CNS0095603Golden flower (diploid) 330.097
CNS0095604Slightly white alabastrum(tetraploid) 145.843
CNS0095605Slightly white alabastrum(tetraploid) 240.150
CNS0095606Slightly white alabastrum(tetraploid) 354.272
CNS0095607Whole white alabastrum(tetraploid) 129.680
CNS0095608Whole white alabastrum(tetraploid) 227.360
CNS0095609Whole white alabastrum(tetraploid) 339.545
CNS0095610Silvery flower (tetraploid) 127.567
CNS0095611Silvery flower (tetraploid) 234.092
CNS0095612Silvery flower (tetraploid) 315.994
CNS0095613Golden flower (tetraploid) 113.303
CNS0095614Golden flower (tetraploid) 219.313
CNS0095615Golden flower (tetraploid) 311.119
CRA001975CRR073297Stem 145.952
CRR073298Stem 248.329
CRR073299Stem 346.416
CRR073300Leaf 142.716
CRR073301Leaf 243.345
CRR073302Leaf 343.875
CRR073303Juvenile bud 138.173
CRR073304Juvenile bud 224.820
CRR073305Juvenile bud 333.697
CRR073306Third green 15.401
CRR073307Third green 27.977
CRR073308Third green 38.955
CRR073309Second white 15.028
CRR073310Second white 25.903
CRR073311Second white 33.942
CRR073312Silver flowering 15.245
CRR073313Silver flowering 22.146
CRR073314Silver flowering 36.841
CRR073315Gold flowering 120.479
CRR073316Gold flowering 224.689
CRR073317Gold flowering 318.759
CRR073318Tawny withering 138.286
CRR073319Tawny withering 242.100
CRR073320Tawny withering 350.171