Gene detail

Detail information of GWHGAAZE009429

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04047.1	5.1144E-154	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6WLH4\|SMH3_MAIZE	0.000000004	Single myb histone 3
trEMBL	tr\|A0A068U6V9\|A0A068U6V9_COFCA	2E-154	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP04047.1}
TAIR10	AT5G58340.2	4E-14	myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110151342	110155309	+
GWHAAZE00000002	mRNA	110151342	110155309	+
GWHAAZE00000002	exon	110151342	110152023	+
GWHAAZE00000002	exon	110152518	110153023	+
GWHAAZE00000002	exon	110154595	110154782	+
GWHAAZE00000002	exon	110155115	110155181	+
GWHAAZE00000002	exon	110155268	110155309	+
GWHAAZE00000002	CDS	110151342	110152023	+
GWHAAZE00000002	CDS	110152518	110153023	+
GWHAAZE00000002	CDS	110154595	110154782	+
GWHAAZE00000002	CDS	110155115	110155181	+
GWHAAZE00000002	CDS	110155268	110155309	+

Transcript Sequence
>GWHTAAZE009439 ATGGACAACGATATTTCTCGTTGGATCCTCGAATTCCTTCTCCGACAACCGGTCGACGATCGCATATTGGACTCTCTAATTCAAGTTCTTCCTCTTCCCAACGACGATTCGAATTTGAAGAAGACTGTCCTTCTAAGAAGAATCCAGTCCGAAATCTCTACCGGTTCGGTATCTGAAAAAATTCTTACACTGATGGAACAAATCGAGGAATTGTATTACAGGGATGGGGTTAAAGTTCCAGAATCAATGAAATCAGCCTATTGTGCAGTAGCAGTAAATTGCACAATTAGGTTTCTTAAAGGTGATAATAAGGAGGTGAATTATTTTGAGGCGGTGAAGAGGATTTGGAAAGGTAGGGTTAGTAAAATGGAGACGGCAGAGATGGCGGGGCTGGTTTCGGAGGAATTGAAGAGGTGGGGGGTGGAAATTGAGGCGGGGGTTTGGGATGGGAGTGTGTGTAAAAAGTTGGTGTTGAGGAGTAAAGAGATTGATGTGTTGGAGGTGGTTAGGGTTTATGTGGAGAAAGAATGGGAGAGTTTGGGTCCTTGTTTTCTTGAGTTGTTGGCTGATTCGTTGGGTGATGATACAGTTAGGGAAGTGCTTGGCTTGTCCAAAAATAGAGAGAATGTGCCAAGTTTGTCAAATAATGCAGAAGACGTGGCTGTTGTTAACAACAATAAAGGTACGCCCAAGAGACATGGTCTGCCCAGACGCAAGCATGTTGCAAGTAGACGTTTTGGAGGAGTAATCGCTGGAACTTCCCGAGGAGTTAGGATTACTGATGATGAGGAATTGGAAGACGGTACATCTTACAAATATAAAATCCTTCAGAGCCCTGAAATTAATAGGATACAGGAGGCACTTAAATCGAGTACTTTGGAGCTAAGAGCGGTGGTGAAGGACCCTCTTCCCGATGCATTAAACTTGGCCAAAACGGTAGTATCTAACATGGAACGAGAAAATGTCGATCATCTTCCTGGAGTAGAAAATAATAGTAGGGTAGATGTGGATGCTCCAAATTCATCTGTTGATAGGAATAATTATGCTGTTCGAGCCGATGGAGGTAATAATGGTCTTGGGGATTGCAGGAATCCGAAAAGTCGGTCCAATACAAGCCTAATGGAACCGAATAGTACCGCTCGTACCTATGAGGTAACAATTTTAATTACCCATAAAAGGAAAAGTGAATGGGATGATTCATTTGATGACCTTCTTGAAGGATCACCTAGTAACAGGAATAGACTTCAATTACCTAGTCCAAATAAAAGGGTTGTTTCTCCTTTGAAGAAGTATGAAATTGCCAAAATCACAAGGAGGAGAAAAATGAAGAAGTGGAGTAACCTGGAGGAAGACACTTTGAGGACTGGTGTGCAGAAGTATGGAAAAGGGAACTGGAAGCTCATCTTAAATATGTATCGCGACATCTTTGAAGAGAGAACTGAGGTTGATTTGAAGGACAAGTGGAGAAACCTGGTACGATACTGA

Network for GWHGAAZE009429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	443	491	3.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.587
	SRR3591706	second leaf	14.890
	SRR3591707	mature leaf	17.507
	SRR3591708	Shoot apex	22.414
	SRR3591709	Stem	18.580
	SRR3591710	White floral bud	18.432
	SRR3591711	White flower	20.974
	SRR3591712	Green floral bud	18.813
	SRR3591713	Yellow flower	23.376
SRP173429	SRR8316895	Juvenile bud stage	13.733
	SRR8316896	Juvenile bud stage	19.832
	SRR8316897	Juvenile bud stage	8.952
	SRR8316894	Third green stage	8.167
	SRR8316900	Third green stage	20.274
	SRR8316901	Third green stage	19.889
	SRR8316898	Complete white stage	7.277
	SRR8316899	Complete white stage	27.345
	SRR8316903	Complete white stage	15.920
	SRR8316902	Silver flowering stage	11.294
	SRR8316904	Silver flowering stage	18.147
	SRR8316905	Silver flowering stage	9.376
	SRR8316906	Gold flowering stage	33.369
	SRR8316907	Gold flowering stage	29.284
	SRR8316908	Gold flowering stage	30.918
SRP132670	SRR6706286	Control	19.429
	SRR6706287	Light intensity 50%	18.741
	SRR6706288	Light intensity 20%	18.343
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.139
	CNS0095593	Slightly white alabastrum(diploid) 2	14.444
	CNS0095594	Slightly white alabastrum(diploid) 3	12.460
	CNS0095595	Whole white alabastrum(diploid) 2	12.754
	CNS0095596	Whole white alabastrum(diploid) 3	10.046
	CNS0095597	Whole white alabastrum(diploid) 4	10.699
	CNS0095598	Silvery flower (diploied) 1	18.506
	CNS0095599	Silvery flower (diploied) 2	20.099
	CNS0095600	Silvery flower (diploied) 3	18.323
	CNS0095601	Golden flower (diploid) 1	19.973
	CNS0095602	Golden flower (diploid) 2	18.455
	CNS0095603	Golden flower (diploid) 3	17.255
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.662
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.942
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.855
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.579
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.890
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.048
	CNS0095610	Silvery flower (tetraploid) 1	21.284
	CNS0095611	Silvery flower (tetraploid) 2	16.828
	CNS0095612	Silvery flower (tetraploid) 3	12.261
	CNS0095613	Golden flower (tetraploid) 1	17.194
	CNS0095614	Golden flower (tetraploid) 2	18.314
	CNS0095615	Golden flower (tetraploid) 3	16.385
CRA001975	CRR073297	Stem 1	11.899
	CRR073298	Stem 2	12.958
	CRR073299	Stem 3	11.442
	CRR073300	Leaf 1	13.466
	CRR073301	Leaf 2	12.397
	CRR073302	Leaf 3	7.005
	CRR073303	Juvenile bud 1	9.380
	CRR073304	Juvenile bud 2	7.583
	CRR073305	Juvenile bud 3	9.142
	CRR073306	Third green 1	2.312
	CRR073307	Third green 2	2.249
	CRR073308	Third green 3	3.694
	CRR073309	Second white 1	3.102
	CRR073310	Second white 2	5.636
	CRR073311	Second white 3	4.513
	CRR073312	Silver flowering 1	3.848
	CRR073313	Silver flowering 2	2.507
	CRR073314	Silver flowering 3	2.790
	CRR073315	Gold flowering 1	8.583
	CRR073316	Gold flowering 2	12.886
	CRR073317	Gold flowering 3	4.117
	CRR073318	Tawny withering 1	7.407
	CRR073319	Tawny withering 2	9.434
	CRR073320	Tawny withering 3	7.526