Detail information of GWHGAAZE009431


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008233881.17.81452E-64PREDICTED: RING-H2 finger protein ATL74-like [Prunus mume]
Swissprottr|Q9FLC6|ATL73_ARATH2E-47RING-H2 finger protein ATL73 (Precursor)
trEMBLtr|M5X121|M5X121_PRUPE3E-64Uncharacterized protein {ECO:0000313|EMBL:EMJ19604.1}
TAIR10AT5G05280.15E-30RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110174888110175271+
GWHAAZE00000002mRNA110174888110175271+
GWHAAZE00000002exon110174888110175271+
GWHAAZE00000002CDS110174888110175271+
Transcript Sequence

Network for GWHGAAZE009431

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2721156.50E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf12.287
SRR3591707mature leaf56.196
SRR3591708Shoot apex1.532
SRR3591709Stem0.268
SRR3591710White floral bud22.765
SRR3591711White flower8.458
SRR3591712Green floral bud29.737
SRR3591713Yellow flower3.308
SRP173429 SRR8316895Juvenile bud stage 5.865
SRR8316896Juvenile bud stage 16.220
SRR8316897Juvenile bud stage 5.282
SRR8316894Third green stage 7.015
SRR8316900Third green stage 7.954
SRR8316901Third green stage 8.292
SRR8316898Complete white stage 1.019
SRR8316899Complete white stage 0.816
SRR8316903Complete white stage 2.623
SRR8316902Silver flowering stage3.670
SRR8316904Silver flowering stage4.723
SRR8316905Silver flowering stage2.245
SRR8316906Gold flowering stage 4.337
SRR8316907Gold flowering stage 5.614
SRR8316908Gold flowering stage 3.813
SRP132670SRR6706286Control8.810
SRR6706287Light intensity 50%9.743
SRR6706288Light intensity 20%9.500
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.234
CNS0095593Slightly white alabastrum(diploid) 26.993
CNS0095594Slightly white alabastrum(diploid) 325.595
CNS0095595Whole white alabastrum(diploid) 25.978
CNS0095596Whole white alabastrum(diploid) 39.721
CNS0095597Whole white alabastrum(diploid) 49.413
CNS0095598Silvery flower (diploied) 17.626
CNS0095599Silvery flower (diploied) 25.246
CNS0095600Silvery flower (diploied) 35.172
CNS0095601Golden flower (diploid) 14.526
CNS0095602Golden flower (diploid) 22.488
CNS0095603Golden flower (diploid) 32.336
CNS0095604Slightly white alabastrum(tetraploid) 18.712
CNS0095605Slightly white alabastrum(tetraploid) 211.792
CNS0095606Slightly white alabastrum(tetraploid) 31.897
CNS0095607Whole white alabastrum(tetraploid) 111.322
CNS0095608Whole white alabastrum(tetraploid) 211.446
CNS0095609Whole white alabastrum(tetraploid) 324.117
CNS0095610Silvery flower (tetraploid) 111.474
CNS0095611Silvery flower (tetraploid) 212.912
CNS0095612Silvery flower (tetraploid) 312.339
CNS0095613Golden flower (tetraploid) 14.290
CNS0095614Golden flower (tetraploid) 212.676
CNS0095615Golden flower (tetraploid) 35.965
CRA001975CRR073297Stem 18.142
CRR073298Stem 213.002
CRR073299Stem 311.677
CRR073300Leaf 14.817
CRR073301Leaf 22.526
CRR073302Leaf 35.709
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.088
CRR073305Juvenile bud 30.000
CRR073306Third green 19.821
CRR073307Third green 28.380
CRR073308Third green 35.696
CRR073309Second white 14.345
CRR073310Second white 26.459
CRR073311Second white 31.858
CRR073312Silver flowering 11.061
CRR073313Silver flowering 22.253
CRR073314Silver flowering 33.128
CRR073315Gold flowering 114.351
CRR073316Gold flowering 225.387
CRR073317Gold flowering 318.716
CRR073318Tawny withering 12.390
CRR073319Tawny withering 20.260
CRR073320Tawny withering 30.643