Detail information of GWHGAAZE009440


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIX10771.12.69707E-89eukaryotic translation initiation factor, partial [Panax notoginseng]
Swissprottr|O24473|IF2B_WHEAT4E-79Eukaryotic translation initiation factor 2 subunit beta
trEMBLtr|W9QYM9|W9QYM9_9ROSA5E-88Eukaryotic translation initiation factor 2 subunit beta {ECO:0000313|EMBL:EXB44649.1}
TAIR10AT5G20920.33E-58eukaryotic translation initiation factor 2 beta subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110318804110323428-
GWHAAZE00000002mRNA110318804110323428-
GWHAAZE00000002exon110323408110323428-
GWHAAZE00000002exon110322264110322372-
GWHAAZE00000002exon110322093110322148-
GWHAAZE00000002exon110321949110322003-
GWHAAZE00000002exon110321757110321854-
GWHAAZE00000002exon110321571110321620-
GWHAAZE00000002exon110321297110321440-
GWHAAZE00000002exon110320991110321132-
GWHAAZE00000002exon110320584110320669-
GWHAAZE00000002exon110318804110319358-
GWHAAZE00000002CDS110323408110323428-
GWHAAZE00000002CDS110322264110322372-
GWHAAZE00000002CDS110322093110322148-
GWHAAZE00000002CDS110321949110322003-
GWHAAZE00000002CDS110321757110321854-
GWHAAZE00000002CDS110321571110321620-
GWHAAZE00000002CDS110321297110321440-
GWHAAZE00000002CDS110320991110321132-
GWHAAZE00000002CDS110320584110320669-
GWHAAZE00000002CDS110319199110319358-
GWHAAZE00000002three_prime_UTR110318804110319198-
Transcript Sequence

Network for GWHGAAZE009440

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0031


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01873.18eIF-5_eIF-2B1482191.10E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03238EIF2S2 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf76.676
SRR3591706second leaf44.176
SRR3591707mature leaf70.366
SRR3591708Shoot apex64.307
SRR3591709Stem96.035
SRR3591710White floral bud95.749
SRR3591711White flower109.855
SRR3591712Green floral bud99.658
SRR3591713Yellow flower89.142
SRP173429 SRR8316895Juvenile bud stage 53.405
SRR8316896Juvenile bud stage 72.637
SRR8316897Juvenile bud stage 28.960
SRR8316894Third green stage 26.436
SRR8316900Third green stage 85.357
SRR8316901Third green stage 82.758
SRR8316898Complete white stage 36.776
SRR8316899Complete white stage 153.886
SRR8316903Complete white stage 50.918
SRR8316902Silver flowering stage40.140
SRR8316904Silver flowering stage45.457
SRR8316905Silver flowering stage22.086
SRR8316906Gold flowering stage 64.566
SRR8316907Gold flowering stage 67.663
SRR8316908Gold flowering stage 73.953
SRP132670SRR6706286Control75.043
SRR6706287Light intensity 50%73.862
SRR6706288Light intensity 20%78.835
CNP0000432CNS0095592Slightly white alabastrum(diploid) 187.726
CNS0095593Slightly white alabastrum(diploid) 2101.926
CNS0095594Slightly white alabastrum(diploid) 381.913
CNS0095595Whole white alabastrum(diploid) 278.087
CNS0095596Whole white alabastrum(diploid) 369.492
CNS0095597Whole white alabastrum(diploid) 474.334
CNS0095598Silvery flower (diploied) 186.812
CNS0095599Silvery flower (diploied) 279.032
CNS0095600Silvery flower (diploied) 387.930
CNS0095601Golden flower (diploid) 182.039
CNS0095602Golden flower (diploid) 277.015
CNS0095603Golden flower (diploid) 375.536
CNS0095604Slightly white alabastrum(tetraploid) 170.638
CNS0095605Slightly white alabastrum(tetraploid) 274.223
CNS0095606Slightly white alabastrum(tetraploid) 3118.546
CNS0095607Whole white alabastrum(tetraploid) 158.471
CNS0095608Whole white alabastrum(tetraploid) 258.589
CNS0095609Whole white alabastrum(tetraploid) 377.907
CNS0095610Silvery flower (tetraploid) 199.830
CNS0095611Silvery flower (tetraploid) 292.941
CNS0095612Silvery flower (tetraploid) 365.410
CNS0095613Golden flower (tetraploid) 172.527
CNS0095614Golden flower (tetraploid) 278.209
CNS0095615Golden flower (tetraploid) 340.361
CRA001975CRR073297Stem 166.879
CRR073298Stem 264.833
CRR073299Stem 377.524
CRR073300Leaf 171.002
CRR073301Leaf 273.918
CRR073302Leaf 364.755
CRR073303Juvenile bud 180.033
CRR073304Juvenile bud 259.607
CRR073305Juvenile bud 375.975
CRR073306Third green 121.225
CRR073307Third green 222.275
CRR073308Third green 327.791
CRR073309Second white 128.648
CRR073310Second white 230.955
CRR073311Second white 321.579
CRR073312Silver flowering 119.346
CRR073313Silver flowering 225.602
CRR073314Silver flowering 326.978
CRR073315Gold flowering 182.370
CRR073316Gold flowering 278.977
CRR073317Gold flowering 373.565
CRR073318Tawny withering 197.695
CRR073319Tawny withering 2104.812
CRR073320Tawny withering 3112.702