Gene detail

Detail information of GWHGAAZE009447

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278951.1	2.2241E-125	PREDICTED: 60S ribosomal protein L10 [Nelumbo nucifera]
Swissprot	tr\|Q9SPB3\|RL10_VITRI	6E-125	60S ribosomal protein L10
trEMBL	tr\|I3SEG3\|I3SEG3_LOTJA	3E-124	Uncharacterized protein {ECO:0000313\|EMBL:AFK38655.1}
TAIR10	AT1G26910.1	3E-91	Ribosomal protein L16p/L10e family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110459961	110461562	+
GWHAAZE00000002	mRNA	110459961	110461562	+
GWHAAZE00000002	exon	110459961	110460363	+
GWHAAZE00000002	exon	110460873	110460954	+
GWHAAZE00000002	exon	110461119	110461562	+
GWHAAZE00000002	five_prime_UTR	110459961	110459962	+
GWHAAZE00000002	CDS	110459963	110460363	+
GWHAAZE00000002	CDS	110460873	110460954	+
GWHAAZE00000002	CDS	110461119	110461187	+
GWHAAZE00000002	three_prime_UTR	110461188	110461562	+

Transcript Sequence
>GWHTAAZE009457 GGATGAAGAAAAAGGGAGTTGATGAATTCCCCTTCTGTGTGCATTTGGTTAGCTGGGAGAAGGAGAATGTCTCCAGTGAGGCACTGGAAGCTGCGCGTATCGCATGTAACAAGTACATGACGAAATTTGCCGGCAAAGACGCCTTCCACTTGAGGGTTAGGGTTCACCCTTTCCATGTTTTACGTATCAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTTCAAACTGGCATGAGGGGTGCTTTTGGTAAGCCACTGGGTACTTGTGCTCGTGTTAGCATCGGTCAGGTCCTTCTCTCAGTCCGTTGCAAGGACTCCAACAAGAATAATGCCCAAGAGGCCTTGCGGCGTGCAAAGTTCAAGTTTCCGGGCCGTCAAAAGATAATTGTCAGCAGGAAGTGGGGGTTCACCAAGTTCAACAGAACAGATTATCTGAAGTGGAAATCCGAAAACCGTATTATGCCAGATGGTGTCAATGCTAAGCTTCTGGGCTGCCATGGACCCCTTGCACAGCGACAACCTGGAAGAGCTTTCATAGACGCAGTTGCTTAAGAGGTCATTTTGTTGGTTGAAGAAGATTTTTGATATGGAACAATTTGCTGGAGTTTGTTTTGGGCGTCTGTTTCCAGTAATGTTTCTTTTACTTTTCTACTAGTATCAGTTGTAGGAAAGTTTTTCCTAAGACTGTATTTTGACATGACACATTGATTATGTCAAGTTTGAAAGATTGTTTTCTTTCAATTTTTTTCACTTAAAATTTGGAGATTCAGCTTATTATTATGATCTTTGGCTGGCGAGAATTGGTACTAAATTTTAGAATATTTTTGGGCTGCTCTGTTTTCTCATTTCAATGAGAGCGTAGTTATTTTTAAATCTGTATGTTTTCCTCTGCCCTTCTGGGTGAGTTTTAGTTGCTTTTGTTCAAAC

Network for GWHGAAZE009447

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00252.19	Ribosomal_L16	13	129	2.00E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02866	RP-L10e, RPL10	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	101.496
	SRR3591706	second leaf	27.672
	SRR3591707	mature leaf	11.158
	SRR3591708	Shoot apex	96.591
	SRR3591709	Stem	47.720
	SRR3591710	White floral bud	30.915
	SRR3591711	White flower	33.706
	SRR3591712	Green floral bud	69.698
	SRR3591713	Yellow flower	21.274
SRP173429	SRR8316895	Juvenile bud stage	59.144
	SRR8316896	Juvenile bud stage	88.532
	SRR8316897	Juvenile bud stage	39.392
	SRR8316894	Third green stage	30.309
	SRR8316900	Third green stage	92.649
	SRR8316901	Third green stage	79.189
	SRR8316898	Complete white stage	12.098
	SRR8316899	Complete white stage	49.783
	SRR8316903	Complete white stage	19.044
	SRR8316902	Silver flowering stage	10.920
	SRR8316904	Silver flowering stage	11.820
	SRR8316905	Silver flowering stage	5.361
	SRR8316906	Gold flowering stage	14.019
	SRR8316907	Gold flowering stage	13.689
	SRR8316908	Gold flowering stage	11.633
SRP132670	SRR6706286	Control	70.894
	SRR6706287	Light intensity 50%	70.567
	SRR6706288	Light intensity 20%	79.075
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	132.706
	CNS0095593	Slightly white alabastrum(diploid) 2	141.485
	CNS0095594	Slightly white alabastrum(diploid) 3	144.915
	CNS0095595	Whole white alabastrum(diploid) 2	114.017
	CNS0095596	Whole white alabastrum(diploid) 3	137.442
	CNS0095597	Whole white alabastrum(diploid) 4	76.376
	CNS0095598	Silvery flower (diploied) 1	41.290
	CNS0095599	Silvery flower (diploied) 2	42.271
	CNS0095600	Silvery flower (diploied) 3	38.531
	CNS0095601	Golden flower (diploid) 1	34.822
	CNS0095602	Golden flower (diploid) 2	33.153
	CNS0095603	Golden flower (diploid) 3	34.772
	CNS0095604	Slightly white alabastrum(tetraploid) 1	167.368
	CNS0095605	Slightly white alabastrum(tetraploid) 2	166.802
	CNS0095606	Slightly white alabastrum(tetraploid) 3	152.756
	CNS0095607	Whole white alabastrum(tetraploid) 1	101.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	76.900
	CNS0095609	Whole white alabastrum(tetraploid) 3	124.629
	CNS0095610	Silvery flower (tetraploid) 1	47.410
	CNS0095611	Silvery flower (tetraploid) 2	42.308
	CNS0095612	Silvery flower (tetraploid) 3	39.812
	CNS0095613	Golden flower (tetraploid) 1	28.605
	CNS0095614	Golden flower (tetraploid) 2	36.081
	CNS0095615	Golden flower (tetraploid) 3	16.099
CRA001975	CRR073297	Stem 1	126.102
	CRR073298	Stem 2	127.925
	CRR073299	Stem 3	144.563
	CRR073300	Leaf 1	111.116
	CRR073301	Leaf 2	120.892
	CRR073302	Leaf 3	174.038
	CRR073303	Juvenile bud 1	123.868
	CRR073304	Juvenile bud 2	100.070
	CRR073305	Juvenile bud 3	94.405
	CRR073306	Third green 1	27.741
	CRR073307	Third green 2	32.406
	CRR073308	Third green 3	26.742
	CRR073309	Second white 1	33.792
	CRR073310	Second white 2	17.158
	CRR073311	Second white 3	12.343
	CRR073312	Silver flowering 1	18.007
	CRR073313	Silver flowering 2	32.428
	CRR073314	Silver flowering 3	20.605
	CRR073315	Gold flowering 1	24.514
	CRR073316	Gold flowering 2	29.372
	CRR073317	Gold flowering 3	31.005
	CRR073318	Tawny withering 1	103.089
	CRR073319	Tawny withering 2	66.482
	CRR073320	Tawny withering 3	107.460