Detail information of GWHGAAZE009449


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265744.10PREDICTED: RING finger and transmembrane domain-containing protein 1 [Vitis vinifera]
Swissprottr|Q6NPT7|HRD1B_ARATH3E-11ERAD-associated E3 ubiquitin-protein ligase HRD1B {ECO:0000305}
trEMBLtr|F6HMS9|F6HMS9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55954.1}
TAIR10AT5G01960.12E-145RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110479790110483855+
GWHAAZE00000002mRNA110479790110483855+
GWHAAZE00000002exon110479790110480333+
GWHAAZE00000002exon110481497110481573+
GWHAAZE00000002exon110481666110481834+
GWHAAZE00000002exon110482492110482580+
GWHAAZE00000002exon110482674110482838+
GWHAAZE00000002exon110482982110483059+
GWHAAZE00000002exon110483224110483327+
GWHAAZE00000002exon110483750110483855+
GWHAAZE00000002CDS110479790110480333+
GWHAAZE00000002CDS110481497110481573+
GWHAAZE00000002CDS110481666110481834+
GWHAAZE00000002CDS110482492110482580+
GWHAAZE00000002CDS110482674110482838+
GWHAAZE00000002CDS110482982110483059+
GWHAAZE00000002CDS110483224110483327+
GWHAAZE00000002CDS110483750110483855+
Transcript Sequence

Network for GWHGAAZE009449

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_23814208.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.098
SRR3591706second leaf6.820
SRR3591707mature leaf6.143
SRR3591708Shoot apex14.152
SRR3591709Stem17.534
SRR3591710White floral bud12.943
SRR3591711White flower11.752
SRR3591712Green floral bud7.690
SRR3591713Yellow flower9.050
SRP173429 SRR8316895Juvenile bud stage 5.907
SRR8316896Juvenile bud stage 7.064
SRR8316897Juvenile bud stage 4.323
SRR8316894Third green stage 2.801
SRR8316900Third green stage 5.584
SRR8316901Third green stage 5.265
SRR8316898Complete white stage 4.407
SRR8316899Complete white stage 13.504
SRR8316903Complete white stage 7.792
SRR8316902Silver flowering stage3.668
SRR8316904Silver flowering stage5.817
SRR8316905Silver flowering stage3.331
SRR8316906Gold flowering stage 8.745
SRR8316907Gold flowering stage 7.053
SRR8316908Gold flowering stage 8.316
SRP132670SRR6706286Control4.440
SRR6706287Light intensity 50%4.561
SRR6706288Light intensity 20%4.557
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.545
CNS0095593Slightly white alabastrum(diploid) 27.047
CNS0095594Slightly white alabastrum(diploid) 37.825
CNS0095595Whole white alabastrum(diploid) 27.471
CNS0095596Whole white alabastrum(diploid) 35.858
CNS0095597Whole white alabastrum(diploid) 46.471
CNS0095598Silvery flower (diploied) 113.463
CNS0095599Silvery flower (diploied) 25.436
CNS0095600Silvery flower (diploied) 37.274
CNS0095601Golden flower (diploid) 111.311
CNS0095602Golden flower (diploid) 29.356
CNS0095603Golden flower (diploid) 38.523
CNS0095604Slightly white alabastrum(tetraploid) 15.513
CNS0095605Slightly white alabastrum(tetraploid) 25.028
CNS0095606Slightly white alabastrum(tetraploid) 310.937
CNS0095607Whole white alabastrum(tetraploid) 14.877
CNS0095608Whole white alabastrum(tetraploid) 22.688
CNS0095609Whole white alabastrum(tetraploid) 35.366
CNS0095610Silvery flower (tetraploid) 15.088
CNS0095611Silvery flower (tetraploid) 25.548
CNS0095612Silvery flower (tetraploid) 37.670
CNS0095613Golden flower (tetraploid) 14.447
CNS0095614Golden flower (tetraploid) 24.611
CNS0095615Golden flower (tetraploid) 34.755
CRA001975CRR073297Stem 15.570
CRR073298Stem 24.314
CRR073299Stem 34.715
CRR073300Leaf 14.796
CRR073301Leaf 24.882
CRR073302Leaf 34.704
CRR073303Juvenile bud 14.605
CRR073304Juvenile bud 22.897
CRR073305Juvenile bud 33.882
CRR073306Third green 15.359
CRR073307Third green 27.833
CRR073308Third green 38.421
CRR073309Second white 14.323
CRR073310Second white 25.338
CRR073311Second white 35.745
CRR073312Silver flowering 12.612
CRR073313Silver flowering 22.958
CRR073314Silver flowering 33.730
CRR073315Gold flowering 14.225
CRR073316Gold flowering 26.234
CRR073317Gold flowering 33.593
CRR073318Tawny withering 15.594
CRR073319Tawny withering 29.277
CRR073320Tawny withering 37.123