Detail information of GWHGAAZE009466


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007039414.12.19966E-30Uncharacterized protein TCM_015661 [Theobroma cacao]
Swissprottr|Q9LIR0|FB183_ARATH1E-15Putative F-box protein At3g23970
trEMBLtr|A0A061G235|A0A061G235_THECC8E-31Uncharacterized protein {ECO:0000313|EMBL:EOY23915.1}
TAIR10AT3G23970.16E-15F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110767305110769862-
GWHAAZE00000002mRNA110767305110769862-
GWHAAZE00000002exon110769338110769862-
GWHAAZE00000002exon110767305110768054-
GWHAAZE00000002CDS110769338110769862-
GWHAAZE00000002CDS110767305110768054-
Transcript Sequence

Network for GWHGAAZE009466

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box20631.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.127
SRR3591706second leaf0.124
SRR3591707mature leaf0.006
SRR3591708Shoot apex0.390
SRR3591709Stem0.006
SRR3591710White floral bud2.034
SRR3591711White flower2.660
SRR3591712Green floral bud2.077
SRR3591713Yellow flower2.298
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.002
SRR8316897Juvenile bud stage 0.068
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.060
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.172
SRR8316903Complete white stage 0.103
SRR8316902Silver flowering stage0.058
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.137
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.077
SRR6706287Light intensity 50%0.133
SRR6706288Light intensity 20%0.254
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.224
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.036
CNS0095603Golden flower (diploid) 30.001
CNS0095604Slightly white alabastrum(tetraploid) 10.082
CNS0095605Slightly white alabastrum(tetraploid) 20.060
CNS0095606Slightly white alabastrum(tetraploid) 30.054
CNS0095607Whole white alabastrum(tetraploid) 10.058
CNS0095608Whole white alabastrum(tetraploid) 20.064
CNS0095609Whole white alabastrum(tetraploid) 30.150
CNS0095610Silvery flower (tetraploid) 10.460
CNS0095611Silvery flower (tetraploid) 20.282
CNS0095612Silvery flower (tetraploid) 30.388
CNS0095613Golden flower (tetraploid) 10.150
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.078
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.038
CRR073301Leaf 20.195
CRR073302Leaf 30.034
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.238
CRR073305Juvenile bud 30.212
CRR073306Third green 10.038
CRR073307Third green 20.063
CRR073308Third green 30.246
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.042
CRR073312Silver flowering 10.149
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.127
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000