Detail information of GWHGAAZE009467


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004242472.21.85628E-39PREDICTED: LOB domain-containing protein 24-like [Solanum lycopersicum]
Swissprottr|Q8LBW3|LBD12_ARATH1E-31LOB domain-containing protein 12
trEMBLtr|K4CAD2|K4CAD2_SOLLC5E-38Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g082770.2.1}
TAIR10AT1G31320.19E-25LOB domain-containing protein 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene110785812110786291+
GWHAAZE00000002mRNA110785812110786291+
GWHAAZE00000002exon110785812110785898+
GWHAAZE00000002exon110786028110786291+
GWHAAZE00000002CDS110785812110785898+
GWHAAZE00000002CDS110786028110786291+
Transcript Sequence

Network for GWHGAAZE009467

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB2781.90E-26
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.410
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.742
SRR3591709Stem1.982
SRR3591710White floral bud2.089
SRR3591711White flower6.021
SRR3591712Green floral bud6.602
SRR3591713Yellow flower3.473
SRP173429 SRR8316895Juvenile bud stage 16.031
SRR8316896Juvenile bud stage 11.593
SRR8316897Juvenile bud stage 10.002
SRR8316894Third green stage 1.444
SRR8316900Third green stage 7.003
SRR8316901Third green stage 8.064
SRR8316898Complete white stage 0.191
SRR8316899Complete white stage 4.552
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.135
SRR8316904Silver flowering stage0.195
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.254
SRR8316908Gold flowering stage 0.453
SRP132670SRR6706286Control2.765
SRR6706287Light intensity 50%2.391
SRR6706288Light intensity 20%2.800
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.803
CNS0095593Slightly white alabastrum(diploid) 27.032
CNS0095594Slightly white alabastrum(diploid) 39.209
CNS0095595Whole white alabastrum(diploid) 28.275
CNS0095596Whole white alabastrum(diploid) 34.323
CNS0095597Whole white alabastrum(diploid) 47.483
CNS0095598Silvery flower (diploied) 15.279
CNS0095599Silvery flower (diploied) 214.629
CNS0095600Silvery flower (diploied) 33.373
CNS0095601Golden flower (diploid) 19.983
CNS0095602Golden flower (diploid) 26.126
CNS0095603Golden flower (diploid) 37.026
CNS0095604Slightly white alabastrum(tetraploid) 13.371
CNS0095605Slightly white alabastrum(tetraploid) 24.227
CNS0095606Slightly white alabastrum(tetraploid) 30.475
CNS0095607Whole white alabastrum(tetraploid) 18.988
CNS0095608Whole white alabastrum(tetraploid) 26.060
CNS0095609Whole white alabastrum(tetraploid) 32.401
CNS0095610Silvery flower (tetraploid) 11.606
CNS0095611Silvery flower (tetraploid) 21.111
CNS0095612Silvery flower (tetraploid) 31.030
CNS0095613Golden flower (tetraploid) 10.054
CNS0095614Golden flower (tetraploid) 20.783
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 12.345
CRR073298Stem 26.204
CRR073299Stem 32.550
CRR073300Leaf 113.488
CRR073301Leaf 218.525
CRR073302Leaf 32.334
CRR073303Juvenile bud 14.146
CRR073304Juvenile bud 25.143
CRR073305Juvenile bud 33.631
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.103
CRR073309Second white 10.000
CRR073310Second white 20.318
CRR073311Second white 30.000
CRR073312Silver flowering 10.518
CRR073313Silver flowering 21.173
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.635
CRR073316Gold flowering 20.717
CRR073317Gold flowering 31.495
CRR073318Tawny withering 10.161
CRR073319Tawny withering 21.766
CRR073320Tawny withering 30.758