Gene detail

Detail information of GWHGAAZE009473

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080591.1	1.67169E-98	PREDICTED: oligoribonuclease-like [Sesamum indicum]
Swissprot	tr\|Q9ZVE0\|ORN_ARATH	1E-84	Oligoribonuclease
trEMBL	tr\|D7T1F5\|D7T1F5_VITVI	4E-92	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24335.3}
TAIR10	AT2G26970.2	3E-69	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110858609	110866866	+
GWHAAZE00000002	mRNA	110858609	110866866	+
GWHAAZE00000002	exon	110858609	110858725	+
GWHAAZE00000002	exon	110860227	110860387	+
GWHAAZE00000002	exon	110861182	110861316	+
GWHAAZE00000002	exon	110862335	110862440	+
GWHAAZE00000002	exon	110863146	110863323	+
GWHAAZE00000002	exon	110864333	110864462	+
GWHAAZE00000002	exon	110864611	110864666	+
GWHAAZE00000002	exon	110865817	110865903	+
GWHAAZE00000002	exon	110866222	110866336	+
GWHAAZE00000002	exon	110866459	110866866	+
GWHAAZE00000002	five_prime_UTR	110858609	110858725	+
GWHAAZE00000002	five_prime_UTR	110860227	110860278	+
GWHAAZE00000002	CDS	110860279	110860387	+
GWHAAZE00000002	CDS	110861182	110861316	+
GWHAAZE00000002	CDS	110862335	110862440	+
GWHAAZE00000002	CDS	110863146	110863323	+
GWHAAZE00000002	CDS	110864333	110864462	+
GWHAAZE00000002	CDS	110864611	110864666	+
GWHAAZE00000002	CDS	110865817	110865903	+
GWHAAZE00000002	CDS	110866222	110866336	+
GWHAAZE00000002	CDS	110866459	110866577	+
GWHAAZE00000002	three_prime_UTR	110866578	110866866	+

Transcript Sequence
>GWHTAAZE009485 TTTCATCCCCAAATCGGCTCTCCCTCCAAGCACGCCTCAATCGTCTCTCTCCCTCCAACAAAATCCGACCGGCTCTCTGGCCTCTACTGCACGCCTACACAGCCGATCGTCTCTCCTTCATTGTACAGGCAATCGATGATCAAAGAATTACAAAATCTTATCAACAGAGATGAATCAGCTGTCAAATGCCTTTTCTTTGCTAGAACTGGATGTTGAGGATGACAAGGAACAAACAGATACTGCTATTGCTGTTAATGGAGAAAGTGCTGATGGAAGAGGTAAGGGTAAGAAAAAAAGTGATAGTTCTGGAGAGACGCCCTTATCAAAAAATGAGAATGGTGGTAATCGAAGCCAAGGAGAAGCATCAGGAGAGTACAGGATGCCTCTTGTGTGGATTGATTTGGAAATGACTGGTTCCAGAGAAGCAGTTTTGAGTCCATTTGTTTCTCATCTGTTGATAAGCAACTATTTGGTTAATATGCTGTCAATCAGAGACTCATCTTTGGTTTCTTTCTCCAGGGCTGGGGTTCCATCAGGTTGCATTAGAGGCTGGTTGAATTTTTCCTTTTGGATTATTGAAGACTGGCTGATGATTGCTATTACTTTTGCTGCCTGCTCAGGTCTAAATATTGAAGTGGATAGAATATTGGAGATTGCTTGTATAATTACAGATGGCAATTTGACCAAATTGATTGAGGGTCCTGATTTGGTTATCCATCAAACGAAGGAATGTATGGACAAAATGGGAGAATGGTGTCAAACTCATCATGGAGAAAGTGGTAAGAAACTTGATAGGCGTTCACACTCTTATTTGTCACCGTCGATTCGGTTGACAGAGAGGGTTCTCCAAAGCACAATCAGTGAACAAGAAGCTGAAAAGCAGGTTGCAGAGTTTGTTAAGAAACATGTAGGCACATATTCGCCTCTTCTTGCTGGAAATTCAGTCTATGTGGATCTTCTGTTTCTTAAGAAATATATGCCAGACTTGGCTAGTCTTTTCCCTCATGTTCTCGTTGATGTCAGTAGCATCACGGCGCTGTGCCTCCGCTGGTACCCAAAGGTCTCCCCCCCAATACACATCTATTATAAGAGAAAGGCACCTCAAAAGGAAAACAAGCACAGAGCCATGGATGACATAAAGGAAAGCATAGCAGAACTTAAATATTACAAAGAGCACATTTTCAAAGCCAAGTCCAAGAAATAAATCTTGTATTTCTTGTGGGCCAAGACTGAATTCAGAGCTGTTTCGCCTAGTTTTGTCTCCTTTTGTAAAATGGTAGTCCTAGTCGAGGTCTTTGCGTGGAATCTCTGATATGTTCCTGTATTAAATATTGATGTCTAAACAGCGTTTTACTCTTAATTCCGACAGACTACTGAACTAGTCCTATATTTGTCTACCTTTGATATGCTTTGTGTAACGACTATAGTGGTATGGAGGTGCTGCTGCCACATTTGCTTCGGTGATGCTGAAATAGGTTTTGGTCGGTTACACA

Network for GWHGAAZE009473

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00929.25	RNase_T	151	329	1.90E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13288	orn, REX2, REXO2	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0000175	molecular_function	3'-5'-exoribonuclease activity
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.402
	SRR3591706	second leaf	26.925
	SRR3591707	mature leaf	25.803
	SRR3591708	Shoot apex	40.657
	SRR3591709	Stem	39.918
	SRR3591710	White floral bud	37.702
	SRR3591711	White flower	33.111
	SRR3591712	Green floral bud	29.717
	SRR3591713	Yellow flower	35.534
SRP173429	SRR8316895	Juvenile bud stage	23.399
	SRR8316896	Juvenile bud stage	31.385
	SRR8316897	Juvenile bud stage	14.305
	SRR8316894	Third green stage	15.261
	SRR8316900	Third green stage	38.839
	SRR8316901	Third green stage	37.772
	SRR8316898	Complete white stage	21.345
	SRR8316899	Complete white stage	50.660
	SRR8316903	Complete white stage	35.776
	SRR8316902	Silver flowering stage	19.800
	SRR8316904	Silver flowering stage	26.211
	SRR8316905	Silver flowering stage	15.340
	SRR8316906	Gold flowering stage	45.072
	SRR8316907	Gold flowering stage	47.025
	SRR8316908	Gold flowering stage	49.252
SRP132670	SRR6706286	Control	34.481
	SRR6706287	Light intensity 50%	30.928
	SRR6706288	Light intensity 20%	35.887
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.586
	CNS0095593	Slightly white alabastrum(diploid) 2	34.990
	CNS0095594	Slightly white alabastrum(diploid) 3	29.059
	CNS0095595	Whole white alabastrum(diploid) 2	31.168
	CNS0095596	Whole white alabastrum(diploid) 3	23.728
	CNS0095597	Whole white alabastrum(diploid) 4	26.133
	CNS0095598	Silvery flower (diploied) 1	38.107
	CNS0095599	Silvery flower (diploied) 2	37.020
	CNS0095600	Silvery flower (diploied) 3	35.519
	CNS0095601	Golden flower (diploid) 1	34.492
	CNS0095602	Golden flower (diploid) 2	33.933
	CNS0095603	Golden flower (diploid) 3	34.433
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.094
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.225
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.322
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.225
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.091
	CNS0095610	Silvery flower (tetraploid) 1	37.958
	CNS0095611	Silvery flower (tetraploid) 2	36.114
	CNS0095612	Silvery flower (tetraploid) 3	32.869
	CNS0095613	Golden flower (tetraploid) 1	32.979
	CNS0095614	Golden flower (tetraploid) 2	31.709
	CNS0095615	Golden flower (tetraploid) 3	34.023
CRA001975	CRR073297	Stem 1	28.822
	CRR073298	Stem 2	27.204
	CRR073299	Stem 3	21.044
	CRR073300	Leaf 1	28.950
	CRR073301	Leaf 2	25.307
	CRR073302	Leaf 3	19.642
	CRR073303	Juvenile bud 1	23.128
	CRR073304	Juvenile bud 2	19.996
	CRR073305	Juvenile bud 3	19.874
	CRR073306	Third green 1	13.193
	CRR073307	Third green 2	12.412
	CRR073308	Third green 3	12.928
	CRR073309	Second white 1	15.083
	CRR073310	Second white 2	15.613
	CRR073311	Second white 3	12.624
	CRR073312	Silver flowering 1	11.067
	CRR073313	Silver flowering 2	9.216
	CRR073314	Silver flowering 3	12.242
	CRR073315	Gold flowering 1	24.177
	CRR073316	Gold flowering 2	23.196
	CRR073317	Gold flowering 3	14.786
	CRR073318	Tawny withering 1	32.701
	CRR073319	Tawny withering 2	29.903
	CRR073320	Tawny withering 3	34.301