Gene detail

Detail information of GWHGAAZE009482

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089569.1	0	PREDICTED: F-box/LRR-repeat protein 12 [Sesamum indicum]
Swissprot	tr\|Q9SRR1\|FBL12_ARATH	2E-160	F-box/LRR-repeat protein 12
trEMBL	tr\|M1BUJ2\|M1BUJ2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400053176}
TAIR10	AT3G07550.2	1E-130	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110953149	110954912	-
GWHAAZE00000002	mRNA	110953149	110954912	-
GWHAAZE00000002	exon	110953149	110954342	-
GWHAAZE00000002	exon	110954530	110954674	-
GWHAAZE00000002	exon	110954890	110954912	-
GWHAAZE00000002	CDS	110954890	110954912	-
GWHAAZE00000002	CDS	110954530	110954674	-
GWHAAZE00000002	CDS	110953149	110954342	-

Transcript Sequence
>GWHTAAZE009494 ATGAGAAATTCAAACTTGCAGTTCTGCGGTTCCTGTGGATACCCTTTGAATTTAGCCTCTTCTAACCGTATTACTTCTGAAATAGGATCCGAGTATAGCAAATCCATCAAGAAAGGTTTTATCTCCTTCCGTTCTATCGATCTGAGCCGCTTTACTCAGATTGATGGGAATCAGAAGAGAGCAAACAAGATTGAAATGGAGAGTAGTTATAGCAATGGTCCTATGAACATTACACACCTTCCTGATGATTGCCTGCGTTACATTTTCCAATGGCTCGACTTAGGCTCCGATCGAGAATCATTCGGCTTAATTTGCCGCCGTTGGCTTCATATTCAAAACTCGAGCCGTCTATCTTTACAATTCAATTGTTCATTCACTCAATTGAGTCGTTCTTCCTTATCTCATTCCAACACCAATATTAACACCTTCCATCTTCATAGATTGCTCAACCGGTTCAGTCACCTAGAGTCGTTGTCCCTATCAGGGTGCACCGAGCTACCAGATTCCGGCCTAGCCCTGTTACAGAGACACGGCTCGAATTTGCGCACCCTTTTTCTCGATTGTTGCTTTGGGATCACCGACGATGGACTTTCTTCGGTTGCCTCTGGTTGCCCCCTTTTGACCTTCATTAGTCTTTACCGATGCAACATAAGTGATATCGGGTTAAAGACCTTGGCTAAATCTTGTTTGGCTTTGAAAGATGTGAACCTCTCGTATTGTTCGCTAATTTCCGACCATGGCATAAGAGCTCTCTCAAACGAGTCCCGTCAGCTTCGGGCCGTCAGAATATCTAACTGCCGAAACATTACCGGTGTCGGTTTTCAAGGGTGTTCCCAAACACTGTCTTATTTAGAAGCCGATTCCTGTAAGCTTGAACCAGAGGGGATATTGGGGATTGTAAGTGGAGGTGGGCTAGAGTACTTGAACCTCTCTAGCCTAAGCTGGTCCATTTGGGGAGACAGGTTGACCGCAATTGGTGCTGGTTTTGCCGCTAAGCTTAGAATCCTTGATCTTCGATTGTGTAGAACTATTGGGGACGAGTCAGTTTTTGCTATTGCTAAAGGCTGTCCATTTCTTGAAGAATGGAACTTGGCATTGTGCCATGAGGTTAAGTTAGCTGGGTGGGAGTCAATTGGCTTGCACAGTCGGAACTTGGAGAAGCTGCATGTGAACCGGTGTCAAAATCTCTGTGATCGTGGGTTACAGGCTCTGAGGGATGGTTGTAACCGGCTAGCCATTTTGTACATTACGCGGTGCGGTCGAATCACCCCATTAGGTATGGAGTTGTTTAGATGTTTAAGAGGGATTGTGGAGATTAAAGAAGAAGAGGTAATGTGTATTGCACCTAATTGGGCATTCTGA

Network for GWHGAAZE009482

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	75	119	4.70E-05
PF13516.7	LRR_6	332	353	0.03
PF13516.7	LRR_6	381	404	0.16

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.928
	SRR3591706	second leaf	5.645
	SRR3591707	mature leaf	5.614
	SRR3591708	Shoot apex	7.952
	SRR3591709	Stem	10.855
	SRR3591710	White floral bud	6.802
	SRR3591711	White flower	12.554
	SRR3591712	Green floral bud	7.010
	SRR3591713	Yellow flower	10.651
SRP173429	SRR8316895	Juvenile bud stage	8.279
	SRR8316896	Juvenile bud stage	9.497
	SRR8316897	Juvenile bud stage	3.770
	SRR8316894	Third green stage	2.879
	SRR8316900	Third green stage	7.604
	SRR8316901	Third green stage	8.956
	SRR8316898	Complete white stage	1.856
	SRR8316899	Complete white stage	10.301
	SRR8316903	Complete white stage	4.821
	SRR8316902	Silver flowering stage	6.222
	SRR8316904	Silver flowering stage	6.999
	SRR8316905	Silver flowering stage	3.030
	SRR8316906	Gold flowering stage	13.768
	SRR8316907	Gold flowering stage	13.343
	SRR8316908	Gold flowering stage	11.584
SRP132670	SRR6706286	Control	7.826
	SRR6706287	Light intensity 50%	6.910
	SRR6706288	Light intensity 20%	7.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.716
	CNS0095593	Slightly white alabastrum(diploid) 2	9.924
	CNS0095594	Slightly white alabastrum(diploid) 3	9.690
	CNS0095595	Whole white alabastrum(diploid) 2	8.335
	CNS0095596	Whole white alabastrum(diploid) 3	3.882
	CNS0095597	Whole white alabastrum(diploid) 4	6.175
	CNS0095598	Silvery flower (diploied) 1	9.920
	CNS0095599	Silvery flower (diploied) 2	10.666
	CNS0095600	Silvery flower (diploied) 3	12.036
	CNS0095601	Golden flower (diploid) 1	9.128
	CNS0095602	Golden flower (diploid) 2	12.227
	CNS0095603	Golden flower (diploid) 3	13.402
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.068
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.576
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.623
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.379
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.567
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.807
	CNS0095610	Silvery flower (tetraploid) 1	3.865
	CNS0095611	Silvery flower (tetraploid) 2	4.597
	CNS0095612	Silvery flower (tetraploid) 3	3.068
	CNS0095613	Golden flower (tetraploid) 1	2.067
	CNS0095614	Golden flower (tetraploid) 2	4.137
	CNS0095615	Golden flower (tetraploid) 3	3.537
CRA001975	CRR073297	Stem 1	10.923
	CRR073298	Stem 2	8.048
	CRR073299	Stem 3	9.936
	CRR073300	Leaf 1	8.234
	CRR073301	Leaf 2	8.699
	CRR073302	Leaf 3	4.574
	CRR073303	Juvenile bud 1	7.167
	CRR073304	Juvenile bud 2	6.583
	CRR073305	Juvenile bud 3	7.192
	CRR073306	Third green 1	7.588
	CRR073307	Third green 2	5.107
	CRR073308	Third green 3	7.443
	CRR073309	Second white 1	9.336
	CRR073310	Second white 2	12.865
	CRR073311	Second white 3	14.070
	CRR073312	Silver flowering 1	19.225
	CRR073313	Silver flowering 2	12.141
	CRR073314	Silver flowering 3	13.504
	CRR073315	Gold flowering 1	6.269
	CRR073316	Gold flowering 2	9.006
	CRR073317	Gold flowering 3	5.638
	CRR073318	Tawny withering 1	17.075
	CRR073319	Tawny withering 2	16.881
	CRR073320	Tawny withering 3	11.124