Gene detail

Detail information of GWHGAAZE009493

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009586824.1	7.3148E-112	PREDICTED: rhodanese-like domain-containing protein 4A, chloroplastic [Nicotiana tomentosiformis]
Swissprot	tr\|Q56XR7\|STR4A_ARATH	3E-74	Rhodanese-like domain-containing protein 4A, chloroplastic (Precursor)
trEMBL	tr\|A0A022S161\|A0A022S161_ERYGU	5E-107	Uncharacterized protein {ECO:0000313\|EMBL:EYU46074.1}
TAIR10	AT3G25480.1	5E-62	Rhodanese/Cell cycle control phosphatase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	111147041	111150109	+
GWHAAZE00000002	mRNA	111147041	111150109	+
GWHAAZE00000002	exon	111147041	111147807	+
GWHAAZE00000002	exon	111149339	111149444	+
GWHAAZE00000002	exon	111149870	111150109	+
GWHAAZE00000002	CDS	111147041	111147807	+
GWHAAZE00000002	CDS	111149339	111149444	+
GWHAAZE00000002	CDS	111149870	111150109	+

Transcript Sequence
>GWHTAAZE009505 ATGGAGTCTCTCTCCATTGGCATTTCATCTTCCCCAACCATCCCAAACCACCCAAAAACCCACAAACCCACCTCCAAATTAAACTTTCTCCTCTCAAATCCACTCCTAAACTCTATTTCCACCTCAAATTCCACTCCCAATGATTCCAATTCTCATAAATCTCATTTCCCTTTCACCAAGAAAATCCCCCTCACTTCCCAAAGCACCCCAATTCACCAATCAAACCAAATCACAACACCTCAATCTTCTTCAAAACCTTCCAAGAACAACAACCCAATTCCCCAAAACCCTTCTCTTTTCCAATTCCTCCCAATTCCTCCCCTTCCTTTTCTCTCTGTTCCTTTTTCTTTCCCTCTTTCATGCTTAGCCTCAGAAACTACATTACCCAATGACCCAGTTTCTAACAAGATAAACGTAGAAGCAATTCTGGTCTCTATTGATGATTTTTTCAATAGGTACCCATTTTTTGTTTCTGGGGTAGTATTCATTTGGCTTGTTGTAATTCCACTAACGGAAGAATACCTCCAAAAGTACAAGTTTATCTCGGCCATTAATGCGTTCAAGAAGCTTAAGGAAGACCCTAATGCTCAGCTCTTGGATATTAGGGCTGCGAAGAGTTTGGGGTTTTTGGGTTCACCCAATTTGAGAATCTTGAAGAAGAGTGTGGTGCAGGTTGAGTTTATTGAGGGAGATGAAGAAGGGTTTGTTAAAAATACTTTGGAGAAGTTTAGGGATCCAGCAAATACTACAATCTGTATTCTTGACAATTTTGATGGTAATTCCATCGAAGTGGCTGAGTTATTGGTCAAGAAAGGGGGTTTCAAAGAGGCTTATGCAATCGATGGTGGGATTAGAGGCAAGAATGGCTGGCTGGCAATCCAGGAAACCCTTCTCCCACCGTCTGTGCACATCTTCCCCAAGAGGAGGGCTAAAAAGTCGCAACAATTTGAGACGAATGGAGGAGCTAACCAGCAAAAAAGTGCAGATAATGATCAGCTTTCATCTGTAGCCATGGGCGAAAAGCTTGAAAATGGATATGTTAACAAGTCTATTGAACCCACCCCAGAAAAAAAACATGATCCTAGATCTTTGTCACCCTACGCGATGGTATGA

Network for GWHGAAZE009493

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0198

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.019
	SRR3591706	second leaf	38.662
	SRR3591707	mature leaf	23.668
	SRR3591708	Shoot apex	31.740
	SRR3591709	Stem	13.708
	SRR3591710	White floral bud	18.854
	SRR3591711	White flower	20.806
	SRR3591712	Green floral bud	19.244
	SRR3591713	Yellow flower	15.686
SRP173429	SRR8316895	Juvenile bud stage	9.392
	SRR8316896	Juvenile bud stage	11.000
	SRR8316897	Juvenile bud stage	10.238
	SRR8316894	Third green stage	5.388
	SRR8316900	Third green stage	19.075
	SRR8316901	Third green stage	13.322
	SRR8316898	Complete white stage	3.804
	SRR8316899	Complete white stage	12.678
	SRR8316903	Complete white stage	10.847
	SRR8316902	Silver flowering stage	5.986
	SRR8316904	Silver flowering stage	12.451
	SRR8316905	Silver flowering stage	5.569
	SRR8316906	Gold flowering stage	16.425
	SRR8316907	Gold flowering stage	13.132
	SRR8316908	Gold flowering stage	14.520
SRP132670	SRR6706286	Control	14.397
	SRR6706287	Light intensity 50%	13.517
	SRR6706288	Light intensity 20%	15.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.789
	CNS0095593	Slightly white alabastrum(diploid) 2	5.397
	CNS0095594	Slightly white alabastrum(diploid) 3	6.334
	CNS0095595	Whole white alabastrum(diploid) 2	7.430
	CNS0095596	Whole white alabastrum(diploid) 3	8.299
	CNS0095597	Whole white alabastrum(diploid) 4	6.418
	CNS0095598	Silvery flower (diploied) 1	9.989
	CNS0095599	Silvery flower (diploied) 2	8.912
	CNS0095600	Silvery flower (diploied) 3	12.889
	CNS0095601	Golden flower (diploid) 1	11.324
	CNS0095602	Golden flower (diploid) 2	14.322
	CNS0095603	Golden flower (diploid) 3	12.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.326
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.049
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.164
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.658
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.783
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.083
	CNS0095610	Silvery flower (tetraploid) 1	19.435
	CNS0095611	Silvery flower (tetraploid) 2	22.223
	CNS0095612	Silvery flower (tetraploid) 3	26.254
	CNS0095613	Golden flower (tetraploid) 1	11.831
	CNS0095614	Golden flower (tetraploid) 2	16.995
	CNS0095615	Golden flower (tetraploid) 3	16.418
CRA001975	CRR073297	Stem 1	12.196
	CRR073298	Stem 2	11.931
	CRR073299	Stem 3	9.059
	CRR073300	Leaf 1	8.042
	CRR073301	Leaf 2	10.086
	CRR073302	Leaf 3	8.068
	CRR073303	Juvenile bud 1	8.932
	CRR073304	Juvenile bud 2	7.508
	CRR073305	Juvenile bud 3	10.878
	CRR073306	Third green 1	6.149
	CRR073307	Third green 2	3.807
	CRR073308	Third green 3	3.731
	CRR073309	Second white 1	8.354
	CRR073310	Second white 2	7.995
	CRR073311	Second white 3	8.790
	CRR073312	Silver flowering 1	11.193
	CRR073313	Silver flowering 2	7.993
	CRR073314	Silver flowering 3	7.620
	CRR073315	Gold flowering 1	13.383
	CRR073316	Gold flowering 2	26.553
	CRR073317	Gold flowering 3	13.427
	CRR073318	Tawny withering 1	4.945
	CRR073319	Tawny withering 2	4.454
	CRR073320	Tawny withering 3	3.608