Gene detail

Detail information of GWHGAAZE009528

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011089017.1	PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Sesamum indicum]
Swissprot	tr\|Q9SW95\|SYNC2_ARATH	Asparagine--tRNA ligase, cytoplasmic 2
trEMBL	tr\|V4TFR2\|V4TFR2_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR50460.1}
TAIR10	AT3G07420.1	asparaginyl-tRNA synthetase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	111862429	111866087	+
GWHAAZE00000002	mRNA	111862429	111866087	+
GWHAAZE00000002	exon	111862429	111862848	+
GWHAAZE00000002	exon	111863332	111863568	+
GWHAAZE00000002	exon	111863791	111864378	+
GWHAAZE00000002	exon	111864470	111864655	+
GWHAAZE00000002	exon	111864743	111864807	+
GWHAAZE00000002	exon	111864896	111865025	+
GWHAAZE00000002	exon	111865692	111865750	+
GWHAAZE00000002	exon	111865904	111866087	+
GWHAAZE00000002	CDS	111862429	111862848	+
GWHAAZE00000002	CDS	111863332	111863568	+
GWHAAZE00000002	CDS	111863791	111864378	+
GWHAAZE00000002	CDS	111864470	111864655	+
GWHAAZE00000002	CDS	111864743	111864807	+
GWHAAZE00000002	CDS	111864896	111865025	+
GWHAAZE00000002	CDS	111865692	111865750	+
GWHAAZE00000002	CDS	111865904	111866087	+

Transcript Sequence
>GWHTAAZE009540 ATGGCCACCGAACCCGAACAAACTCTTACAGAAACCCCAATTCCAATGGTGATAACCCTTTCAAAATACTCAGACAGGGTTTTGTTGAAAACCTTACTGGGTCGTAGTGATGGTGGATTAGGGCTAATCGGAGAGAGAGTTGTGATCGGAGGTTGGGTTAAGTCAGCCAAAGAGGTGAGGAAAGAAGCTGTGCCAGCTGCTCAGGCTCAGCCTAGGCCTGTAGCTGGGGAACCTAAGAATGATGTAACTTGTGTTGAGGTTTTACAGTCACGAATACCGTTTATACGATCCATTATGAAGGTTTTGGGTGGAGGCGCTGGTCATTTTCGCGATAAGCTTGAGTTTTCTGTTCCTAGGCCGCCAACGCTTTCCACGGTTATTCTGCAAGTTAGTGATGGGAGTTGTGTGTCTAGTCTTCAGATTCTGGTAGATTCATCTCTATTCCCCCCCAGCCAAGTAATGCCCACTGGAACTTGCATATTAGCAGAAGGCATATTGCAGCATCCACTGGTGCATGTAAAACATGTAATTGAGCTCAAAACAGAGAGAATTCTGCACGTTGGTACAGTTGATCAAGACAAGTACCCTTTATCAAAGAAGCGCTTACCTCTTGAGATGTTGAGAGATCGTCCCCACTTTAGACCTCGAACAACAACAGTGGCTTCTGTAATGAGAATACGAAACTCTCTAACTCAAGCTACTCACACTTTCTTCCAAAACGAAGGCTTCCTTAATGTACAAGTGCCCATTATTACCACCACAGATACTGAAGGATTCAGCGAAAAATTCCAAGTTACAACCCTTTTAAGCAAGGACCTTAAAAAGGAGGAGCCCATTACAATGGATGACACAGGAGCTATTAGCCTTGAAGCTGTTAAAGCTTCTATTATTGAGAAAAGCAAGCAAGTTGAAGAACTTAAAAGAACCGATAGTAATAAGGAAGCACTAGCTGCTGCAATTCAAGATCTTCACAAAACGAATGAATTGGTGTCGAAATTGGAAGCAAGAGAAAAATCAAAGCCGGATACTTACATTAAGGCCGAGAAATTCAAATTTTCTGAGGATTTTTTTGGCCGACAAGCTTACTTGACTGTATCTGGCTCGCTTCACCTCGAGAGCTTTGCAAGTGCTCTTGGAAATGTTTACTCGTTTGGGCCCACATTTCAAGCTGAAAGGACTGAGTCCAAGAAAATGTTAGCGGAGATGTGGATGGTCGAGGCAGAAATGGCATTTTCGCAATTAGAGGATTCCATGAATTGTGCCGATGATTTTTTGAAGTTCCTCAGCAAATGGGTTTTAGAAAATTGCGATGAAGATCTGGCATTTGTCTCAAAACGAATCGACAAAACCATAGTGGACCGCCTTCAATTGGTGATGTCAAGTTCGTTCGAAAAGATCACTTACGCAGAAGCGGTGGAGGTTTTGAAACAGGTTACACAGAAGACATTCAAAACCAAAATTGAGTGGGGAGTTTCCCTTACAGAAGAACATGAAAGTTATTTGGTTGATGAGATCTATAAAAGGCCGGTGATCATATACAATTACCCCAAAGAACTTAAACCGTTCTATGTGCGCCTAAATGATGACGGTAAAACAGTTGCAGCATTTGATCTGGTTGTACCAAAGGTTGGAACTCTGATTAGAGGTGGCCAAAACGAGGAACGTCTTGATACCTTAACTACAAGGATTAAGGAACTGGGACTGGAAAATGAGCAGTATCAATGGTACTTGGATCTTCGAAGGCACGGAAGTGTGAAGAACTCGGGTTTTCGACTAGTATTCGATCTTATGGTTTTGTATGCCACTGGGCTCAATGATGTTAGAGATGTTGCCCCTTTCCCTAGAAGTTGTGGCAAAGCCTTTGACTGA

Network for GWHGAAZE009528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00152.21	tRNA-synt_2	205	268	1.20E-10
PF00152.21	tRNA-synt_2	347	615	9.20E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01893	NARS, asnS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.854
	SRR3591706	second leaf	9.444
	SRR3591707	mature leaf	1.046
	SRR3591708	Shoot apex	7.937
	SRR3591709	Stem	15.153
	SRR3591710	White floral bud	6.958
	SRR3591711	White flower	6.215
	SRR3591712	Green floral bud	10.381
	SRR3591713	Yellow flower	1.686
SRP173429	SRR8316895	Juvenile bud stage	3.658
	SRR8316896	Juvenile bud stage	4.271
	SRR8316897	Juvenile bud stage	1.750
	SRR8316894	Third green stage	3.068
	SRR8316900	Third green stage	10.056
	SRR8316901	Third green stage	10.837
	SRR8316898	Complete white stage	0.457
	SRR8316899	Complete white stage	3.093
	SRR8316903	Complete white stage	0.561
	SRR8316902	Silver flowering stage	0.311
	SRR8316904	Silver flowering stage	0.208
	SRR8316905	Silver flowering stage	0.055
	SRR8316906	Gold flowering stage	0.208
	SRR8316907	Gold flowering stage	0.117
	SRR8316908	Gold flowering stage	0.180
SRP132670	SRR6706286	Control	2.069
	SRR6706287	Light intensity 50%	2.549
	SRR6706288	Light intensity 20%	1.905
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.030
	CNS0095593	Slightly white alabastrum(diploid) 2	14.436
	CNS0095594	Slightly white alabastrum(diploid) 3	8.632
	CNS0095595	Whole white alabastrum(diploid) 2	6.950
	CNS0095596	Whole white alabastrum(diploid) 3	5.014
	CNS0095597	Whole white alabastrum(diploid) 4	2.764
	CNS0095598	Silvery flower (diploied) 1	1.185
	CNS0095599	Silvery flower (diploied) 2	1.366
	CNS0095600	Silvery flower (diploied) 3	0.300
	CNS0095601	Golden flower (diploid) 1	0.838
	CNS0095602	Golden flower (diploid) 2	0.364
	CNS0095603	Golden flower (diploid) 3	0.538
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.836
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.139
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.735
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.273
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.194
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.666
	CNS0095610	Silvery flower (tetraploid) 1	0.519
	CNS0095611	Silvery flower (tetraploid) 2	0.422
	CNS0095612	Silvery flower (tetraploid) 3	0.866
	CNS0095613	Golden flower (tetraploid) 1	0.045
	CNS0095614	Golden flower (tetraploid) 2	0.424
	CNS0095615	Golden flower (tetraploid) 3	0.346
CRA001975	CRR073297	Stem 1	2.530
	CRR073298	Stem 2	2.787
	CRR073299	Stem 3	2.844
	CRR073300	Leaf 1	5.875
	CRR073301	Leaf 2	6.507
	CRR073302	Leaf 3	8.390
	CRR073303	Juvenile bud 1	1.811
	CRR073304	Juvenile bud 2	0.191
	CRR073305	Juvenile bud 3	1.624
	CRR073306	Third green 1	0.141
	CRR073307	Third green 2	0.723
	CRR073308	Third green 3	0.513
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.044
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.001
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.426
	CRR073316	Gold flowering 2	1.238
	CRR073317	Gold flowering 3	0.419
	CRR073318	Tawny withering 1	4.519
	CRR073319	Tawny withering 2	3.721
	CRR073320	Tawny withering 3	6.470