Detail information of GWHGAAZE009543


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFK40150.11.8806E-128unknown [Lotus japonicus]
Swissprottr|Q08069|RS8_MAIZE5E-13740S ribosomal protein S8
trEMBLtr|B4FE90|B4FE90_MAIZE4E-13540S ribosomal protein S8 {ECO:0000256|RuleBase:RU000669}
TAIR10AT5G59240.13E-70Ribosomal protein S8e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene112107517112110338-
GWHAAZE00000002mRNA112107517112110338-
GWHAAZE00000002exon112110190112110338-
GWHAAZE00000002exon112108431112108761-
GWHAAZE00000002exon112107903112108075-
GWHAAZE00000002exon112107517112107604-
GWHAAZE00000002CDS112110190112110338-
GWHAAZE00000002CDS112108431112108761-
GWHAAZE00000002CDS112107903112108075-
GWHAAZE00000002CDS112107517112107604-
Transcript Sequence

Network for GWHGAAZE009543

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01201.23Ribosomal_S8e262218.60E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02995RP-S8e, RPS8 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf115.371
SRR3591706second leaf67.136
SRR3591707mature leaf15.966
SRR3591708Shoot apex146.792
SRR3591709Stem56.502
SRR3591710White floral bud51.069
SRR3591711White flower39.707
SRR3591712Green floral bud96.175
SRR3591713Yellow flower30.599
SRP173429 SRR8316895Juvenile bud stage 96.933
SRR8316896Juvenile bud stage 137.977
SRR8316897Juvenile bud stage 56.719
SRR8316894Third green stage 53.444
SRR8316900Third green stage 122.152
SRR8316901Third green stage 138.451
SRR8316898Complete white stage 21.554
SRR8316899Complete white stage 78.422
SRR8316903Complete white stage 34.388
SRR8316902Silver flowering stage16.497
SRR8316904Silver flowering stage13.519
SRR8316905Silver flowering stage7.988
SRR8316906Gold flowering stage 23.186
SRR8316907Gold flowering stage 21.624
SRR8316908Gold flowering stage 28.171
SRP132670SRR6706286Control152.614
SRR6706287Light intensity 50%156.024
SRR6706288Light intensity 20%166.027
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1149.560
CNS0095593Slightly white alabastrum(diploid) 2161.447
CNS0095594Slightly white alabastrum(diploid) 3163.765
CNS0095595Whole white alabastrum(diploid) 2110.330
CNS0095596Whole white alabastrum(diploid) 3120.986
CNS0095597Whole white alabastrum(diploid) 478.887
CNS0095598Silvery flower (diploied) 143.321
CNS0095599Silvery flower (diploied) 244.887
CNS0095600Silvery flower (diploied) 330.617
CNS0095601Golden flower (diploid) 131.950
CNS0095602Golden flower (diploid) 222.342
CNS0095603Golden flower (diploid) 319.383
CNS0095604Slightly white alabastrum(tetraploid) 1129.255
CNS0095605Slightly white alabastrum(tetraploid) 2121.463
CNS0095606Slightly white alabastrum(tetraploid) 3134.053
CNS0095607Whole white alabastrum(tetraploid) 174.090
CNS0095608Whole white alabastrum(tetraploid) 262.429
CNS0095609Whole white alabastrum(tetraploid) 3106.943
CNS0095610Silvery flower (tetraploid) 125.118
CNS0095611Silvery flower (tetraploid) 218.003
CNS0095612Silvery flower (tetraploid) 314.964
CNS0095613Golden flower (tetraploid) 19.494
CNS0095614Golden flower (tetraploid) 215.800
CNS0095615Golden flower (tetraploid) 35.574
CRA001975CRR073297Stem 1178.156
CRR073298Stem 2178.786
CRR073299Stem 3180.604
CRR073300Leaf 1159.130
CRR073301Leaf 2175.926
CRR073302Leaf 3175.931
CRR073303Juvenile bud 1117.084
CRR073304Juvenile bud 2102.315
CRR073305Juvenile bud 3103.456
CRR073306Third green 122.490
CRR073307Third green 235.625
CRR073308Third green 326.378
CRR073309Second white 112.567
CRR073310Second white 212.346
CRR073311Second white 38.371
CRR073312Silver flowering 18.997
CRR073313Silver flowering 29.978
CRR073314Silver flowering 37.484
CRR073315Gold flowering 136.552
CRR073316Gold flowering 251.104
CRR073317Gold flowering 337.126
CRR073318Tawny withering 1159.238
CRR073319Tawny withering 2124.193
CRR073320Tawny withering 3181.253