Gene detail

Detail information of GWHGAAZE009594

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245983.1	3.11669E-68	PREDICTED: cyclin-dependent kinase inhibitor 5 [Nelumbo nucifera]
Swissprot	tr\|Q9FKB5\|KRP3_ARATH	1E-52	Cyclin-dependent kinase inhibitor 3
trEMBL	tr\|D7U3J2\|D7U3J2_VITVI	3E-67	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37311.3}
TAIR10	AT5G48820.1	8E-33	inhibitor/interactor with cyclin-dependent kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	113136523	113138963	-
GWHAAZE00000002	mRNA	113136523	113138963	-
GWHAAZE00000002	exon	113136523	113136589	-
GWHAAZE00000002	exon	113136683	113136886	-
GWHAAZE00000002	exon	113138566	113138963	-
GWHAAZE00000002	CDS	113138566	113138963	-
GWHAAZE00000002	CDS	113136683	113136886	-
GWHAAZE00000002	CDS	113136523	113136589	-

Transcript Sequence
>GWHTAAZE009606 ATGGGGAAATTCATGAGGAAAGCTAAAATCACTAGAGACGTTGCTGCTGTGATGGATTTATCTCAGTCTTCCTCTCTCGGTGTCCGTACCAGGGCCAAAACCTTAGCTCTCCAGAGACTCCAATCACAAAACCCTAATTCCTCTAATTTTCTCGAGCTTCGTAGCCGGAGGCTAGAAAAGCCTCCACTAGTTTCAACTCCCAAAGATAGTTCCCCTCAAAACCCTAACCCTAACTCTAACCCTACCCAGAGTTCGAAGAAACAAAAAGAGGGGTATTTAGGTGAAATAAACACTCTATTGGCAAGCAAAGAAGATGATGAAACAGGATGTGATAACTGCGATTTGGGTGTTCAAGTTTCGTTTGGAGAGAACAATTTGGACTTTGATGGCAGAGAGAGCAGGAGCAGGAGCACGAGGGAAAGCACACCTTGTAGCGTGATACGAGACTCAGACACCATTGGGACCACCACCCCTGGTTCTAGTACCAGGCCAACTAGCTTATCTACTCGAAGAATTCGCCCGAGAAACATCCCTACGGCTCATGAATTAGAGGAGTTCTTTACCCATGCAGAACGGGAAGAACAGAGAGTTTTTACGGAGAAGTACAACTTTGATGTGGTGAACGATGTGCCCCTAGAGGGACGTTATGAATGGGTTAGATTGTACTAA

Network for GWHGAAZE009594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0032

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02234.20	CDI	175	221	2.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007050	biological_process	cell cycle arrest
GO:0005634	cellular_component	nucleus
GO:0004861	molecular_function	cyclin-dependent protein serine/threonine kinase inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.357
	SRR3591706	second leaf	8.934
	SRR3591707	mature leaf	10.804
	SRR3591708	Shoot apex	34.472
	SRR3591709	Stem	30.938
	SRR3591710	White floral bud	9.716
	SRR3591711	White flower	18.690
	SRR3591712	Green floral bud	5.339
	SRR3591713	Yellow flower	17.204
SRP173429	SRR8316895	Juvenile bud stage	6.965
	SRR8316896	Juvenile bud stage	6.609
	SRR8316897	Juvenile bud stage	1.610
	SRR8316894	Third green stage	2.480
	SRR8316900	Third green stage	4.164
	SRR8316901	Third green stage	2.978
	SRR8316898	Complete white stage	0.741
	SRR8316899	Complete white stage	11.998
	SRR8316903	Complete white stage	3.662
	SRR8316902	Silver flowering stage	2.041
	SRR8316904	Silver flowering stage	1.691
	SRR8316905	Silver flowering stage	0.648
	SRR8316906	Gold flowering stage	3.330
	SRR8316907	Gold flowering stage	2.864
	SRR8316908	Gold flowering stage	7.118
SRP132670	SRR6706286	Control	3.233
	SRR6706287	Light intensity 50%	3.063
	SRR6706288	Light intensity 20%	3.364
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.422
	CNS0095593	Slightly white alabastrum(diploid) 2	5.604
	CNS0095594	Slightly white alabastrum(diploid) 3	5.854
	CNS0095595	Whole white alabastrum(diploid) 2	6.358
	CNS0095596	Whole white alabastrum(diploid) 3	2.338
	CNS0095597	Whole white alabastrum(diploid) 4	5.000
	CNS0095598	Silvery flower (diploied) 1	12.116
	CNS0095599	Silvery flower (diploied) 2	5.716
	CNS0095600	Silvery flower (diploied) 3	6.133
	CNS0095601	Golden flower (diploid) 1	10.208
	CNS0095602	Golden flower (diploid) 2	10.721
	CNS0095603	Golden flower (diploid) 3	11.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.706
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.370
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.963
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.964
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.088
	CNS0095610	Silvery flower (tetraploid) 1	5.840
	CNS0095611	Silvery flower (tetraploid) 2	6.193
	CNS0095612	Silvery flower (tetraploid) 3	4.581
	CNS0095613	Golden flower (tetraploid) 1	4.636
	CNS0095614	Golden flower (tetraploid) 2	5.581
	CNS0095615	Golden flower (tetraploid) 3	5.456
CRA001975	CRR073297	Stem 1	5.381
	CRR073298	Stem 2	3.600
	CRR073299	Stem 3	7.154
	CRR073300	Leaf 1	1.996
	CRR073301	Leaf 2	2.519
	CRR073302	Leaf 3	2.384
	CRR073303	Juvenile bud 1	2.562
	CRR073304	Juvenile bud 2	1.005
	CRR073305	Juvenile bud 3	2.813
	CRR073306	Third green 1	0.414
	CRR073307	Third green 2	0.846
	CRR073308	Third green 3	2.459
	CRR073309	Second white 1	2.301
	CRR073310	Second white 2	3.666
	CRR073311	Second white 3	2.903
	CRR073312	Silver flowering 1	7.461
	CRR073313	Silver flowering 2	6.018
	CRR073314	Silver flowering 3	5.928
	CRR073315	Gold flowering 1	3.402
	CRR073316	Gold flowering 2	6.617
	CRR073317	Gold flowering 3	3.834
	CRR073318	Tawny withering 1	17.606
	CRR073319	Tawny withering 2	15.505
	CRR073320	Tawny withering 3	14.591