Detail information of GWHGAAZE009595


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266086.18.1208E-145PREDICTED: E3 ubiquitin-protein ligase PRT1 [Vitis vinifera]
Swissprottr|Q8LBL5|PRT1_ARATH1E-111E3 ubiquitin-protein ligase PRT1
trEMBLtr|F6I011|F6I011_VITVI3E-145Putative uncharacterized protein {ECO:0000313|EMBL:CCB60277.1}
TAIR10AT3G24800.14E-93proteolysis 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene113190854113195587-
GWHAAZE00000002mRNA113190854113195587-
GWHAAZE00000002exon113190854113191225-
GWHAAZE00000002exon113191777113191892-
GWHAAZE00000002exon113193368113193574-
GWHAAZE00000002exon113193691113194047-
GWHAAZE00000002exon113194145113194324-
GWHAAZE00000002exon113194401113194429-
GWHAAZE00000002exon113195520113195587-
GWHAAZE00000002CDS113195520113195587-
GWHAAZE00000002CDS113194401113194429-
GWHAAZE00000002CDS113194145113194324-
GWHAAZE00000002CDS113193691113194047-
GWHAAZE00000002CDS113193368113193574-
GWHAAZE00000002CDS113191777113191892-
GWHAAZE00000002CDS113190854113191225-
Transcript Sequence

Network for GWHGAAZE009595

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_318635.00E-08
PF13445.7zf-RING_UBOX1942185.90E-06
PF00569.18ZZ3093508.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.458
SRR3591706second leaf45.213
SRR3591707mature leaf67.935
SRR3591708Shoot apex35.112
SRR3591709Stem83.871
SRR3591710White floral bud127.416
SRR3591711White flower154.450
SRR3591712Green floral bud51.248
SRR3591713Yellow flower140.286
SRP173429 SRR8316895Juvenile bud stage 25.946
SRR8316896Juvenile bud stage 34.030
SRR8316897Juvenile bud stage 14.668
SRR8316894Third green stage 15.714
SRR8316900Third green stage 52.738
SRR8316901Third green stage 45.814
SRR8316898Complete white stage 74.454
SRR8316899Complete white stage 89.650
SRR8316903Complete white stage 85.821
SRR8316902Silver flowering stage74.759
SRR8316904Silver flowering stage100.278
SRR8316905Silver flowering stage40.912
SRR8316906Gold flowering stage 141.277
SRR8316907Gold flowering stage 127.410
SRR8316908Gold flowering stage 134.519
SRP132670SRR6706286Control52.613
SRR6706287Light intensity 50%54.927
SRR6706288Light intensity 20%52.316
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.680
CNS0095593Slightly white alabastrum(diploid) 227.860
CNS0095594Slightly white alabastrum(diploid) 330.058
CNS0095595Whole white alabastrum(diploid) 230.855
CNS0095596Whole white alabastrum(diploid) 331.937
CNS0095597Whole white alabastrum(diploid) 430.569
CNS0095598Silvery flower (diploied) 145.596
CNS0095599Silvery flower (diploied) 252.327
CNS0095600Silvery flower (diploied) 3130.925
CNS0095601Golden flower (diploid) 138.797
CNS0095602Golden flower (diploid) 292.981
CNS0095603Golden flower (diploid) 388.781
CNS0095604Slightly white alabastrum(tetraploid) 132.428
CNS0095605Slightly white alabastrum(tetraploid) 229.483
CNS0095606Slightly white alabastrum(tetraploid) 336.968
CNS0095607Whole white alabastrum(tetraploid) 129.635
CNS0095608Whole white alabastrum(tetraploid) 230.091
CNS0095609Whole white alabastrum(tetraploid) 339.049
CNS0095610Silvery flower (tetraploid) 1106.592
CNS0095611Silvery flower (tetraploid) 2107.925
CNS0095612Silvery flower (tetraploid) 3169.005
CNS0095613Golden flower (tetraploid) 176.821
CNS0095614Golden flower (tetraploid) 287.450
CNS0095615Golden flower (tetraploid) 3124.712
CRA001975CRR073297Stem 132.699
CRR073298Stem 230.261
CRR073299Stem 336.348
CRR073300Leaf 135.700
CRR073301Leaf 230.987
CRR073302Leaf 338.910
CRR073303Juvenile bud 141.342
CRR073304Juvenile bud 255.669
CRR073305Juvenile bud 339.818
CRR073306Third green 194.319
CRR073307Third green 276.305
CRR073308Third green 386.514
CRR073309Second white 185.499
CRR073310Second white 2102.090
CRR073311Second white 387.555
CRR073312Silver flowering 186.231
CRR073313Silver flowering 281.821
CRR073314Silver flowering 376.977
CRR073315Gold flowering 147.637
CRR073316Gold flowering 260.596
CRR073317Gold flowering 337.751
CRR073318Tawny withering 130.174
CRR073319Tawny withering 231.584
CRR073320Tawny withering 332.599