Gene detail

Detail information of GWHGAAZE009596

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03866.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FUY2\|LEUNG_ARATH	3E-145	Transcriptional corepressor LEUNIG
trEMBL	tr\|A0A068U5U5\|A0A068U5U5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03866.1}
TAIR10	AT2G32700.6	0	LEUNIG_homolog

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	113231401	113240701	-
GWHAAZE00000002	mRNA	113231401	113240701	-
GWHAAZE00000002	exon	113231401	113231947	-
GWHAAZE00000002	exon	113232252	113232449	-
GWHAAZE00000002	exon	113232568	113232687	-
GWHAAZE00000002	exon	113232790	113232945	-
GWHAAZE00000002	exon	113233089	113233238	-
GWHAAZE00000002	exon	113233720	113233826	-
GWHAAZE00000002	exon	113234375	113234513	-
GWHAAZE00000002	exon	113234779	113235009	-
GWHAAZE00000002	exon	113235425	113235496	-
GWHAAZE00000002	exon	113237662	113237910	-
GWHAAZE00000002	exon	113238007	113238053	-
GWHAAZE00000002	exon	113238846	113238957	-
GWHAAZE00000002	exon	113239071	113239146	-
GWHAAZE00000002	exon	113239258	113239553	-
GWHAAZE00000002	exon	113239753	113239862	-
GWHAAZE00000002	exon	113240059	113240156	-
GWHAAZE00000002	exon	113240670	113240701	-
GWHAAZE00000002	CDS	113240670	113240701	-
GWHAAZE00000002	CDS	113240059	113240156	-
GWHAAZE00000002	CDS	113239753	113239862	-
GWHAAZE00000002	CDS	113239258	113239553	-
GWHAAZE00000002	CDS	113239071	113239146	-
GWHAAZE00000002	CDS	113238846	113238957	-
GWHAAZE00000002	CDS	113238007	113238053	-
GWHAAZE00000002	CDS	113237662	113237910	-
GWHAAZE00000002	CDS	113235425	113235496	-
GWHAAZE00000002	CDS	113234779	113235009	-
GWHAAZE00000002	CDS	113234375	113234513	-
GWHAAZE00000002	CDS	113233720	113233826	-
GWHAAZE00000002	CDS	113233089	113233238	-
GWHAAZE00000002	CDS	113232790	113232945	-
GWHAAZE00000002	CDS	113232568	113232687	-
GWHAAZE00000002	CDS	113232252	113232449	-
GWHAAZE00000002	CDS	113231804	113231947	-
GWHAAZE00000002	three_prime_UTR	113231401	113231803	-

Transcript Sequence
>GWHTAAZE009608 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTGTACATTCATGACTATTTGTTGAAAAGAAAATTGCATGCTTCTGCAAAAGCTTTCATGACCGAAGGGAAGGTTGCCACAGATCCAGTAGCTATTGATGCACCTGGAGGGTTTCTCTTCGAATGGTGGTCTGTCTTTTGGGACATATTCATTGCAAGGACAAATGAGAAACATTCTGAAGCTGCTGCATCTTACATAGAGACACAACAAATGAAAGCAAGAGATCACCAACAGCAGCTGCAAATGCAGCAATTGCAACTCATGCAACAGAGAAATGCTCAGTTTCAACGACGGGACCCTAATCATCCTCCCCTTAGTGGTCCAATAGGTGCTCTGAACTCTGAAGGGATGATGGGACAGCCATCGGCCAGTGTATTGGCTATGAAAATGTACGAAGAACGTATGAAACATCCTCATTCAGTGGATTCCGAGGCATCCCCAGCCCTTATTGATGCCAACAGGATGGCCCTTCTAAAATCAGCTACCAATCATCAAGGCCAGTTGGTACAAGGCAATTCTGGGAGCATGTCTTCGGCTTTGCAGCAAATGCAAGGGAGATCTCAACTGGCTACTGACATAAAAGGGGAGGTTAATTTGGGTGCAACTCAGAAATCTATGACGACAGATCCCTCGTCAATTTATGGACAAGCAATTTTGCAGTCAAAGTCTGGACTGAGTGGTGCAGGATTGAATCAAGGTGGTGGTCTTCCATTGCAGGGTTGGCCTCTAACTGGAATTGACCAATTACGGCCAAATTTAGGTTTGCAAATGCAAAAGCCCAATCTACAGACCCAAAATCAGTTTCTCTTGGCATCACAACAACAGCAGGCTTTAGCACAAGCTCAGGCGCAGGGTAATCTTGGAGGTTCACCAAACTATGGGTTTTCTGGATTACCAAGGGGTAACTTGAATTCCAAAGATGGTCAACATGCAAGAAATGATGGATCTATATGCTCTCCAGTGCAATCAAATTCACCAAAGATGAAGATACCCCCCGTGCAACAGTCTTCCTCTCAACAACAGGACCAGTTGCAGCAGCAGTCACTGCAACAGAATAACAGAAAAAGGAAACAGCATTCTTCATCTGGAGCGGCCAACAGTACAGGTACAGGAAATACACTGGGGCCTTCACCAAACTCTCCGCCATCAACAACTCACACACCTGGTGGTGATGGAATTACTACTACCGCTAGTAGTCTGCAACATCACAGTGCCCCAAAGAGCTTATCAATGTATGGTGGCGCAGAGGGAACAAGTGGTCTTGCTTCGTCCACAAATCAGCTGGACGACTTAGAGCATTTTGCTGATGTTGGATCCCTTGATGATAATGTGGAATCGTTTCTGTCGAATGATGGAGATGGAAGAGATTTATATGGCACACTAAAACAAACTCTTGCTGAGCCCAAAACAGAGCCTTCTAAGGGTTTTTCGTTTGGGGAAGGTAGCTGTATACGGACAAGAAATAAAGTTACCTGCTGTCATTTTTCTTCAGACGGGAAGTTGCTTGCTAGCGCCGGGCATGACAAGAAGGCTGTTCTTTGGAACATGGAAACCCTGCAAACGGAGAGCACTCCTGAAGAACACCAATACTTAATAACCGATGTCCGTTTTAGGCCGAACTCAACTCAGCTAGTGACAGCTTCATTTGATAAGTCTGTGAGATTGTGGGATGCAGCTAATCCTAGCTATTGTTTGAATGCGTACACCGGTCACCCTTCACATGTTATGTCCCTAGATTTCCATCCCAAGAAGAACGATCTGTTCTGTTTTTGTGACAGTAACAATGAAATTCGCTATTGGAATATCAGCTCATTCTCATGCACTCGAATTTCCAAGCAAGGAGGTAGTGCGCAAGTGAGATTTCAGCCAATAATGGGAAATCTACTAGCGGCAGCATCAGATAAAGTGGTATCCATTTTTGATATTGAAACTGACAGGCAAACCCATTCTTTCCAGGGACACTCTGGAGTGGTGAACTACCTGTGTTGGGATCTTAGTGGTGGGTATTTGGCATCTGTCAGTGAGGATTCTGTGAGGGTTTGGTCATTATCCTCAGGGGACTGTATTCATGAGCTCAGTTCCAATGGAAACCAGTTCCATTCTTGTGTTTTCCATCCAAGTTATTCACCCCTATTGGTCATCGGAGGAATGCGGTCTTTGGAGCTGTGGAACATGGCAGAGAACAAGAGCATGACGGTACCAGCACATGACAATATAATTGCTTCTCTGGCACAATCACCTGTCACTGGAATGGTTGCTTCAGCAAGTCACGACAGCTCAATTAAGTTATGGAAATAAGTTTAGAGACCGATAATAAAATTTAGTAATATATATATCTTGGAGTTACAGCCACAGCACTTAAAACCGCTTCCGCTGACAAAAGTGTGAAACTGCTTCCATCCCTGTCAATGGAAAATGGCCAAAGAAAGGTAAAGGTAGTAGGTGTTAGGGTTCGAAGTGGTGCGGGTTTTGCTGTATTTGTGAAATATTTTGTGGTAGTGATTGTAAAAGTCGAAGTCATTTTACTTTGAGCTTTGTGGGTTAATTGATGTTGATAATTTAGAAAATTCAAAGTACCAAAATGTGGGAAGTGAGTCGCATTTTATATCTTCGTGTTTACTATAAGCAATAATAATGGTATATAGCGCATCTGTTCATAGTGGCTTACCGCCCGTTGTATATTGCTGGATCGTAGCTAGGG

Network for GWHGAAZE009596

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08513.12	LisH	10	36	2.30E-06
PF00400.33	WD40	501	528	0.00059
PF00400.33	WD40	537	570	0.00018
PF00400.33	WD40	577	614	0.095
PF00400.33	WD40	660	695	0.0073
PF00400.33	WD40	743	778	0.04

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LUG
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.914
	SRR3591706	second leaf	27.297
	SRR3591707	mature leaf	35.064
	SRR3591708	Shoot apex	34.478
	SRR3591709	Stem	55.017
	SRR3591710	White floral bud	62.956
	SRR3591711	White flower	74.526
	SRR3591712	Green floral bud	46.277
	SRR3591713	Yellow flower	81.121
SRP173429	SRR8316895	Juvenile bud stage	26.527
	SRR8316896	Juvenile bud stage	37.863
	SRR8316897	Juvenile bud stage	17.678
	SRR8316894	Third green stage	15.024
	SRR8316900	Third green stage	37.355
	SRR8316901	Third green stage	38.263
	SRR8316898	Complete white stage	26.289
	SRR8316899	Complete white stage	60.584
	SRR8316903	Complete white stage	44.242
	SRR8316902	Silver flowering stage	33.070
	SRR8316904	Silver flowering stage	45.555
	SRR8316905	Silver flowering stage	19.941
	SRR8316906	Gold flowering stage	69.852
	SRR8316907	Gold flowering stage	71.551
	SRR8316908	Gold flowering stage	74.071
SRP132670	SRR6706286	Control	41.818
	SRR6706287	Light intensity 50%	46.023
	SRR6706288	Light intensity 20%	45.124
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.949
	CNS0095593	Slightly white alabastrum(diploid) 2	30.673
	CNS0095594	Slightly white alabastrum(diploid) 3	29.723
	CNS0095595	Whole white alabastrum(diploid) 2	28.618
	CNS0095596	Whole white alabastrum(diploid) 3	24.404
	CNS0095597	Whole white alabastrum(diploid) 4	27.826
	CNS0095598	Silvery flower (diploied) 1	39.257
	CNS0095599	Silvery flower (diploied) 2	40.811
	CNS0095600	Silvery flower (diploied) 3	66.246
	CNS0095601	Golden flower (diploid) 1	42.191
	CNS0095602	Golden flower (diploid) 2	71.054
	CNS0095603	Golden flower (diploid) 3	67.425
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.725
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.444
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.525
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.031
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.484
	CNS0095610	Silvery flower (tetraploid) 1	71.755
	CNS0095611	Silvery flower (tetraploid) 2	69.508
	CNS0095612	Silvery flower (tetraploid) 3	76.960
	CNS0095613	Golden flower (tetraploid) 1	55.129
	CNS0095614	Golden flower (tetraploid) 2	70.214
	CNS0095615	Golden flower (tetraploid) 3	78.981
CRA001975	CRR073297	Stem 1	41.291
	CRR073298	Stem 2	39.722
	CRR073299	Stem 3	36.117
	CRR073300	Leaf 1	44.673
	CRR073301	Leaf 2	38.434
	CRR073302	Leaf 3	30.464
	CRR073303	Juvenile bud 1	35.723
	CRR073304	Juvenile bud 2	29.659
	CRR073305	Juvenile bud 3	44.265
	CRR073306	Third green 1	41.451
	CRR073307	Third green 2	29.165
	CRR073308	Third green 3	35.979
	CRR073309	Second white 1	39.224
	CRR073310	Second white 2	54.331
	CRR073311	Second white 3	59.078
	CRR073312	Silver flowering 1	55.354
	CRR073313	Silver flowering 2	47.846
	CRR073314	Silver flowering 3	52.061
	CRR073315	Gold flowering 1	23.591
	CRR073316	Gold flowering 2	27.856
	CRR073317	Gold flowering 3	19.292
	CRR073318	Tawny withering 1	30.024
	CRR073319	Tawny withering 2	29.014
	CRR073320	Tawny withering 3	29.858