Gene detail

Detail information of GWHGAAZE009600

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007049800.1	GTP-binding family protein [Theobroma cacao]
Swissprot	tr\|Q9M8Z5\|NSN1_ARATH	Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBL	tr\|A0A061DNE0\|A0A061DNE0_THECC	GTP-binding family protein {ECO:0000313\|EMBL:EOX93957.1}
TAIR10	AT3G07050.1	GTP-binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	113324422	113329055	+
GWHAAZE00000002	mRNA	113324422	113329055	+
GWHAAZE00000002	exon	113324422	113324492	+
GWHAAZE00000002	exon	113324641	113324888	+
GWHAAZE00000002	exon	113325967	113326075	+
GWHAAZE00000002	exon	113326194	113326367	+
GWHAAZE00000002	exon	113326595	113326830	+
GWHAAZE00000002	exon	113326956	113327220	+
GWHAAZE00000002	exon	113327789	113327974	+
GWHAAZE00000002	exon	113328117	113328328	+
GWHAAZE00000002	exon	113328693	113329055	+
GWHAAZE00000002	five_prime_UTR	113324422	113324473	+
GWHAAZE00000002	CDS	113324474	113324492	+
GWHAAZE00000002	CDS	113324641	113324888	+
GWHAAZE00000002	CDS	113325967	113326075	+
GWHAAZE00000002	CDS	113326194	113326367	+
GWHAAZE00000002	CDS	113326595	113326830	+
GWHAAZE00000002	CDS	113326956	113327220	+
GWHAAZE00000002	CDS	113327789	113327974	+
GWHAAZE00000002	CDS	113328117	113328328	+
GWHAAZE00000002	CDS	113328693	113329055	+

Transcript Sequence
>GWHTAAZE009612 TGAAAAAAGAAAAAAAAATCAACTCCACTCATCTCGTTGTAACAGTCAAAGGATGCCGAAGAAAAGCAAAAAGAGTAAGAGTAAGAGAACATCATTGAAGCAGAAGTATAAGGTGATAAGGAAGGTGAAGGAGCACCACAAGAAGAAGGCGAAACAAGCGAAGAAGCTAGGGTTGAACATCCACAAGTCCAAGGTAGAGAAGGACCCTGGTATTCCTAATGACTGGCCTTTCAAGGAGCAAGAGCTCAAGGCTCTCGAGGCTCGCCGTGCTAAAGCAGTCGAGGAACTTGAGCAGAAGAAAGCTGCTCGCAAAGAGAGGGCTAAGAAGAGAAAGTTGGGGCTGCTAGAGGATGATGATATCTCCAAATCAGCTGACCCCATTTCCATGGAAGAAGAGAAAAATTCCACCAGAATCGATAAAATACGGGATAAACCAGAGAGAGCTTTCTATAAGGAATTGACAAAAGTCATTGAAGCATCAGATGTTATTGTGGAAGTGCTCGATGCTCGAGACCCCCTTGGCACTCGCTGTGTTGATATGGAAAATATGGTGATTAGAGCAGGTCCCGAGAAACATCTAGTGTTGCTCCTTAACAAAATAGATCTTGTCCCTCGGGAAGCAGTTGAGAAGTGGCTCAAGTATCTCAGAGAGGAATTACCAGCAGTTGCCTTTAAGTGTAGCACTCAAGAGCAAAAGTCAAACTTAGGGTGGAAATCTGCAAAGAGGGCTTCAAAAGCTGCCAGGGCCGCAAAACCAAGCAATGTTCTGCAAACTAGTGACTGTCTTGGAGCTGAAACTCTTTTAAAATTGCTCAAGAATTACTCAAGAAGCCATGAGATTAAGAAATCGATAACTGTGGGTGTTGTTGGCCTTCCTAATGTTGGTAAGAGTAGTCTGATTAATAGCTTGAAGAGATGTCATGTTGTCAATGTTGGAGCTACTCCAGGCTTAACAAAATCTATGCAAGAAGTTCAGTTGGACAAAAATGTTAAATTATTGGACTGCCCTGGTGTTGTGATGATTAAATCAGGGGAGAATGATGCATCTATTGCACTCCGAAATTGCAAGCGAATTGAGAAGTTAGAGGATCCAGTTGGTCCAGTGAAGGAAATTCTCAAGCTCTGTCCTGGTAAAATGTTGGTAACATTATATAAGCTCCCTACCTTTGATTCAGAATCAGTTGATGACTTCCTCCAAAAGGTAGCTACTGTTAGGGGTAAGCTCAAAAAGGGTGGCATTGCAGATGTTGATGCGGCTGCAAGGATCATTTTGCATGACTGGAATGAGGGTAAAATTCCATACTACACGATGCCCCCAACTAGGAATGAAGGAGAGCCTTCAGAAGCAAAGATTGTCCCGGAACTTGGGAAGGAGTTCAATGTGGATGAAGTATATGGTAACGAGTCCTCATTTATTGGGAGCCTAAAGTCTCTGGGTGATTTTCACTCTGTTGAAGTTCCTCCAAATCCCCCTCTTGATTTTGATGAGAAGATGCTCGAGGAGGATGAAGAGCCAGAACCATCAACACGAGGCAAAAACATAACTGATGGCGAAATTGATAGTAGTAAGGATGATCCTATGGTACAAGCAGATGATGCAGCAGGGGAGAAGACAGCCAAATCTGCAAGTAGTAGGCAAAACGATAAGTTATATGTGGCTGAAGGTGTGCTCAACACTAAAGTGAAGAGAGCAGAGAAGAAAAAACGGAAAGTATACAAAAAGACGGATTCGATGGAAGATGATTATGACTTCAAGGTGGACTACATCAAGGATGGATCTGCCATGGATGATGATGACTTGGTTGATGATATCGATAAAAATAAGTCTCAATTGCCGGTACCTGAGGTGGAGTTAGATAAGTGA

Network for GWHGAAZE009600

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08701.12	GN3L_Grn1	16	92	1.20E-17
PF01926.24	MMR_HSR1	269	331	8.30E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14538	NUG1, GNL3	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.083
	SRR3591706	second leaf	24.430
	SRR3591707	mature leaf	17.500
	SRR3591708	Shoot apex	41.926
	SRR3591709	Stem	24.480
	SRR3591710	White floral bud	22.432
	SRR3591711	White flower	31.203
	SRR3591712	Green floral bud	41.370
	SRR3591713	Yellow flower	21.043
SRP173429	SRR8316895	Juvenile bud stage	21.465
	SRR8316896	Juvenile bud stage	29.130
	SRR8316897	Juvenile bud stage	18.305
	SRR8316894	Third green stage	13.581
	SRR8316900	Third green stage	36.285
	SRR8316901	Third green stage	32.590
	SRR8316898	Complete white stage	5.947
	SRR8316899	Complete white stage	35.465
	SRR8316903	Complete white stage	12.948
	SRR8316902	Silver flowering stage	9.568
	SRR8316904	Silver flowering stage	12.358
	SRR8316905	Silver flowering stage	6.164
	SRR8316906	Gold flowering stage	16.779
	SRR8316907	Gold flowering stage	19.713
	SRR8316908	Gold flowering stage	19.878
SRP132670	SRR6706286	Control	31.919
	SRR6706287	Light intensity 50%	31.316
	SRR6706288	Light intensity 20%	34.313
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.994
	CNS0095593	Slightly white alabastrum(diploid) 2	26.632
	CNS0095594	Slightly white alabastrum(diploid) 3	22.426
	CNS0095595	Whole white alabastrum(diploid) 2	20.105
	CNS0095596	Whole white alabastrum(diploid) 3	17.335
	CNS0095597	Whole white alabastrum(diploid) 4	15.875
	CNS0095598	Silvery flower (diploied) 1	24.208
	CNS0095599	Silvery flower (diploied) 2	23.419
	CNS0095600	Silvery flower (diploied) 3	18.642
	CNS0095601	Golden flower (diploid) 1	16.121
	CNS0095602	Golden flower (diploid) 2	19.727
	CNS0095603	Golden flower (diploid) 3	19.371
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.796
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.167
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.012
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.952
	CNS0095610	Silvery flower (tetraploid) 1	18.248
	CNS0095611	Silvery flower (tetraploid) 2	17.033
	CNS0095612	Silvery flower (tetraploid) 3	10.474
	CNS0095613	Golden flower (tetraploid) 1	9.272
	CNS0095614	Golden flower (tetraploid) 2	14.283
	CNS0095615	Golden flower (tetraploid) 3	9.058
CRA001975	CRR073297	Stem 1	31.841
	CRR073298	Stem 2	29.196
	CRR073299	Stem 3	30.627
	CRR073300	Leaf 1	29.367
	CRR073301	Leaf 2	24.429
	CRR073302	Leaf 3	22.498
	CRR073303	Juvenile bud 1	22.781
	CRR073304	Juvenile bud 2	15.425
	CRR073305	Juvenile bud 3	26.491
	CRR073306	Third green 1	2.651
	CRR073307	Third green 2	2.651
	CRR073308	Third green 3	3.779
	CRR073309	Second white 1	3.961
	CRR073310	Second white 2	5.445
	CRR073311	Second white 3	5.652
	CRR073312	Silver flowering 1	4.270
	CRR073313	Silver flowering 2	2.871
	CRR073314	Silver flowering 3	3.962
	CRR073315	Gold flowering 1	10.040
	CRR073316	Gold flowering 2	18.916
	CRR073317	Gold flowering 3	9.046
	CRR073318	Tawny withering 1	24.578
	CRR073319	Tawny withering 2	22.914
	CRR073320	Tawny withering 3	28.772