Detail information of GWHGAAZE009610


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010109687.10hypothetical protein L484_015172 [Morus notabilis]
Swissprottr|Q944R1|PLY15_ARATH0Probable pectate lyase 15 (Precursor)
trEMBLtr|W9SB38|W9SB38_9ROSA0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT4G13710.10Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene113546464113551356+
GWHAAZE00000002mRNA113546464113551356+
GWHAAZE00000002exon113546464113546519+
GWHAAZE00000002exon113546891113546944+
GWHAAZE00000002exon113547915113547986+
GWHAAZE00000002exon113549944113550586+
GWHAAZE00000002exon113550673113550776+
GWHAAZE00000002exon113550871113551009+
GWHAAZE00000002exon113551144113551356+
GWHAAZE00000002CDS113546464113546519+
GWHAAZE00000002CDS113546891113546944+
GWHAAZE00000002CDS113547915113547986+
GWHAAZE00000002CDS113549944113550586+
GWHAAZE00000002CDS113550673113550776+
GWHAAZE00000002CDS113550871113551009+
GWHAAZE00000002CDS113551144113551356+
Transcript Sequence

Network for GWHGAAZE009610

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41673441.40E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf158.522
SRR3591706second leaf23.012
SRR3591707mature leaf1.597
SRR3591708Shoot apex29.813
SRR3591709Stem4.573
SRR3591710White floral bud401.072
SRR3591711White flower6.197
SRR3591712Green floral bud162.928
SRR3591713Yellow flower0.337
SRP173429 SRR8316895Juvenile bud stage 29.659
SRR8316896Juvenile bud stage 31.587
SRR8316897Juvenile bud stage 13.942
SRR8316894Third green stage 36.001
SRR8316900Third green stage 166.355
SRR8316901Third green stage 150.215
SRR8316898Complete white stage 154.503
SRR8316899Complete white stage 224.307
SRR8316903Complete white stage 202.758
SRR8316902Silver flowering stage2.550
SRR8316904Silver flowering stage7.608
SRR8316905Silver flowering stage3.115
SRR8316906Gold flowering stage 2.356
SRR8316907Gold flowering stage 1.871
SRR8316908Gold flowering stage 3.142
SRP132670SRR6706286Control185.324
SRR6706287Light intensity 50%261.386
SRR6706288Light intensity 20%280.895
CNP0000432CNS0095592Slightly white alabastrum(diploid) 154.609
CNS0095593Slightly white alabastrum(diploid) 276.220
CNS0095594Slightly white alabastrum(diploid) 338.650
CNS0095595Whole white alabastrum(diploid) 264.168
CNS0095596Whole white alabastrum(diploid) 368.020
CNS0095597Whole white alabastrum(diploid) 459.776
CNS0095598Silvery flower (diploied) 14.770
CNS0095599Silvery flower (diploied) 23.376
CNS0095600Silvery flower (diploied) 33.790
CNS0095601Golden flower (diploid) 13.729
CNS0095602Golden flower (diploid) 22.024
CNS0095603Golden flower (diploid) 31.838
CNS0095604Slightly white alabastrum(tetraploid) 156.890
CNS0095605Slightly white alabastrum(tetraploid) 241.216
CNS0095606Slightly white alabastrum(tetraploid) 3140.974
CNS0095607Whole white alabastrum(tetraploid) 127.777
CNS0095608Whole white alabastrum(tetraploid) 231.592
CNS0095609Whole white alabastrum(tetraploid) 3107.836
CNS0095610Silvery flower (tetraploid) 11.613
CNS0095611Silvery flower (tetraploid) 21.628
CNS0095612Silvery flower (tetraploid) 35.251
CNS0095613Golden flower (tetraploid) 10.312
CNS0095614Golden flower (tetraploid) 20.509
CNS0095615Golden flower (tetraploid) 30.223
CRA001975CRR073297Stem 1184.735
CRR073298Stem 2188.321
CRR073299Stem 3168.120
CRR073300Leaf 1390.415
CRR073301Leaf 2350.830
CRR073302Leaf 3413.466
CRR073303Juvenile bud 1336.615
CRR073304Juvenile bud 2567.677
CRR073305Juvenile bud 3476.100
CRR073306Third green 1289.032
CRR073307Third green 2148.373
CRR073308Third green 3200.451
CRR073309Second white 14.394
CRR073310Second white 22.472
CRR073311Second white 30.683
CRR073312Silver flowering 10.281
CRR073313Silver flowering 20.286
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.290
CRR073316Gold flowering 21.253
CRR073317Gold flowering 32.972
CRR073318Tawny withering 116.176
CRR073319Tawny withering 212.290
CRR073320Tawny withering 36.223