Gene detail

Detail information of GWHGAAZE009614

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011080157.1	PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Sesamum indicum]
Swissprot	tr\|Q9SZD4\|PRS4A_ARATH	26S proteasome regulatory subunit 4 homolog A
trEMBL	tr\|A0A068U5S4\|A0A068U5S4_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03836.1}
TAIR10	AT4G29040.1	regulatory particle AAA-ATPase 2A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	113643979	113647898	+
GWHAAZE00000002	mRNA	113643979	113647898	+
GWHAAZE00000002	exon	113643979	113644455	+
GWHAAZE00000002	exon	113645479	113645724	+
GWHAAZE00000002	exon	113646938	113646982	+
GWHAAZE00000002	exon	113647117	113647286	+
GWHAAZE00000002	exon	113647367	113647583	+
GWHAAZE00000002	exon	113647674	113647898	+
GWHAAZE00000002	CDS	113643979	113644455	+
GWHAAZE00000002	CDS	113645479	113645724	+
GWHAAZE00000002	CDS	113646938	113646982	+
GWHAAZE00000002	CDS	113647117	113647286	+
GWHAAZE00000002	CDS	113647367	113647583	+
GWHAAZE00000002	CDS	113647674	113647898	+

Transcript Sequence
>GWHTAAZE009626 ATGGGACAGGGAACCCCCGGCGGTCTGAACCGGCAAAACCAAGGCGACCGCAAGAACGAAGGCGACAAAAAGGAGAAAAAATTCGAACCGGCGGCACCACCGGCCCGCGTTGGCCGGAAACAACGCAAGCAGAAGGGACCGGAGGCGGCGGCTCGACTTCCGACTGTCACTCCATTAACGAAGTGCAAGCTGAGGCTGTTAAAACTTGAGCGTATAAAGGACTATCTTCTAATGGAAGAAGAATTTGTTAGCAATCAGGAGAGATTGAAACCTCAAGAGGAGAAGACCGAGGAGGATAGGTCTAAGGTCGACGATCTACGTGGATCTCCGATGAGCGTTGGGAATCTCGAGGAGTTGATCGATGAGAATCACGCTATTGTTTCGTCTTCGGTGGGGCCGGAGTATTATGTGGGGATTTTGTCGTTCGTTGATAAGGATCAACTTGAACCTGGATGTGCGATCTTAATGCATAACAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGACGAAGTTGATCCTATGGTCTCTGTAATGAAGGTTGAGAAGGCTCCATTAGAATCGTATGCTGATATAGGCGGGTTAGATGCCCAGATACAGGAAATCAAAGAAGCAGTTGAGCTGCCCCTGACACACCCTGAATTGTATGAAGATATTGGTATCAAGCCTCCTAAAGGGGTCATACTCTATGGAGAACCTGGCACAGGAAAGACACTGCTTGCAAAGGGAGGAAGTGACCTGTGCCATCATAGTCTGCCTGCTATTGGTAGGGCAGTGGCAAACTCAACATCGGCAACTTTCTTACGTGTTGTTGGAAGTGAATTAATTCAAAAATACCTGGGAGACGGTCCAAAATTGGTGAGGGAGCTTTTCAGAGTTGCTGATGATCTCTCACCATCTATCGTGTTCATTGATGAAATTGATGCTGTTGGTACAAAAAGGTACGATGCCCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGAGCTGCTGAACCAGTTAGATGGTTTCGATTCAAGGGGAGATGTCAAGGTTATCCTTGCTACTAACAAAATTGAAAGTCTTGATCCTGCCTTGCTTCGGCCTGGCCGAATTGATAGGAAGATTGAATTCCCTCTTCCAGATATTAAAACCAGAAGGCGCATTTTCCAGATACACACATCAAGAATGACATTGGCTGATGATGTCAACTTGGAAGAATTTGTGATGACGAAAGATGAGTTTTCAGGGGCGGATATAAAGGCCATATGTACTGAAGCTGGTTTGCTTGCTCTAAGGGAGCGTCGTATGAAGGTGACTCATCCTGATTTCAAGAAGGCTAAAGATAAGGTCATGTTCAAGAAGAAAGAGGGAGTCCCTGAAGGACTCTACATGTGA

Network for GWHGAAZE009614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0060

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16450.6	Prot_ATP_ID_OB	113	166	4.40E-10
PF00004.30	AAA	226	374	1.50E-33
PF17862.2	AAA_lid_3	396	439	1.80E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03062	PSMC1, RPT2	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0030163	biological_process	protein catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0016787	molecular_function	hydrolase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	151.202
	SRR3591706	second leaf	65.164
	SRR3591707	mature leaf	49.172
	SRR3591708	Shoot apex	133.945
	SRR3591709	Stem	126.136
	SRR3591710	White floral bud	142.473
	SRR3591711	White flower	212.698
	SRR3591712	Green floral bud	128.715
	SRR3591713	Yellow flower	152.486
SRP173429	SRR8316895	Juvenile bud stage	112.432
	SRR8316896	Juvenile bud stage	164.619
	SRR8316897	Juvenile bud stage	78.255
	SRR8316894	Third green stage	71.294
	SRR8316900	Third green stage	189.814
	SRR8316901	Third green stage	174.519
	SRR8316898	Complete white stage	87.761
	SRR8316899	Complete white stage	226.596
	SRR8316903	Complete white stage	127.846
	SRR8316902	Silver flowering stage	95.190
	SRR8316904	Silver flowering stage	110.230
	SRR8316905	Silver flowering stage	58.398
	SRR8316906	Gold flowering stage	224.960
	SRR8316907	Gold flowering stage	221.252
	SRR8316908	Gold flowering stage	246.526
SRP132670	SRR6706286	Control	166.727
	SRR6706287	Light intensity 50%	167.272
	SRR6706288	Light intensity 20%	181.014
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	114.973
	CNS0095593	Slightly white alabastrum(diploid) 2	115.220
	CNS0095594	Slightly white alabastrum(diploid) 3	110.729
	CNS0095595	Whole white alabastrum(diploid) 2	105.342
	CNS0095596	Whole white alabastrum(diploid) 3	101.353
	CNS0095597	Whole white alabastrum(diploid) 4	90.019
	CNS0095598	Silvery flower (diploied) 1	108.211
	CNS0095599	Silvery flower (diploied) 2	104.664
	CNS0095600	Silvery flower (diploied) 3	186.853
	CNS0095601	Golden flower (diploid) 1	96.006
	CNS0095602	Golden flower (diploid) 2	160.655
	CNS0095603	Golden flower (diploid) 3	150.756
	CNS0095604	Slightly white alabastrum(tetraploid) 1	129.258
	CNS0095605	Slightly white alabastrum(tetraploid) 2	102.666
	CNS0095606	Slightly white alabastrum(tetraploid) 3	173.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	87.527
	CNS0095608	Whole white alabastrum(tetraploid) 2	72.131
	CNS0095609	Whole white alabastrum(tetraploid) 3	132.705
	CNS0095610	Silvery flower (tetraploid) 1	183.400
	CNS0095611	Silvery flower (tetraploid) 2	178.267
	CNS0095612	Silvery flower (tetraploid) 3	163.155
	CNS0095613	Golden flower (tetraploid) 1	135.457
	CNS0095614	Golden flower (tetraploid) 2	160.773
	CNS0095615	Golden flower (tetraploid) 3	170.479
CRA001975	CRR073297	Stem 1	182.364
	CRR073298	Stem 2	171.397
	CRR073299	Stem 3	206.785
	CRR073300	Leaf 1	187.093
	CRR073301	Leaf 2	176.559
	CRR073302	Leaf 3	216.173
	CRR073303	Juvenile bud 1	218.339
	CRR073304	Juvenile bud 2	206.590
	CRR073305	Juvenile bud 3	202.121
	CRR073306	Third green 1	143.915
	CRR073307	Third green 2	133.892
	CRR073308	Third green 3	142.318
	CRR073309	Second white 1	185.216
	CRR073310	Second white 2	193.032
	CRR073311	Second white 3	155.800
	CRR073312	Silver flowering 1	120.523
	CRR073313	Silver flowering 2	115.461
	CRR073314	Silver flowering 3	91.382
	CRR073315	Gold flowering 1	118.948
	CRR073316	Gold flowering 2	139.770
	CRR073317	Gold flowering 3	125.242
	CRR073318	Tawny withering 1	180.375
	CRR073319	Tawny withering 2	152.926
	CRR073320	Tawny withering 3	194.621