Detail information of GWHGAAZE009616


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009591396.11.6103E-122PREDICTED: transcription factor PIF1-like [Nicotiana tomentosiformis]
Swissprottr|Q8GZM7|PIF1_ARATH4E-59Transcription factor PIF1
trEMBLtr|M1BMV1|M1BMV1_SOLTU5E-121Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400048756}
TAIR10AT2G20180.38E-44phytochrome interacting factor 3-like 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene113654873113660894-
GWHAAZE00000002mRNA113654873113660894-
GWHAAZE00000002exon113654873113655040-
GWHAAZE00000002exon113655142113655207-
GWHAAZE00000002exon113655309113655407-
GWHAAZE00000002exon113659654113659829-
GWHAAZE00000002exon113659988113660610-
GWHAAZE00000002exon113660704113660894-
GWHAAZE00000002five_prime_UTR113660796113660894-
GWHAAZE00000002CDS113660704113660795-
GWHAAZE00000002CDS113659988113660610-
GWHAAZE00000002CDS113659654113659829-
GWHAAZE00000002CDS113655309113655407-
GWHAAZE00000002CDS113655142113655207-
GWHAAZE00000002CDS113654873113655040-
Transcript Sequence

Network for GWHGAAZE009616

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH3243703.60E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.086
SRR3591706second leaf44.244
SRR3591707mature leaf44.393
SRR3591708Shoot apex30.995
SRR3591709Stem12.243
SRR3591710White floral bud4.145
SRR3591711White flower4.602
SRR3591712Green floral bud2.203
SRR3591713Yellow flower0.776
SRP173429 SRR8316895Juvenile bud stage 11.524
SRR8316896Juvenile bud stage 12.850
SRR8316897Juvenile bud stage 5.309
SRR8316894Third green stage 2.940
SRR8316900Third green stage 2.738
SRR8316901Third green stage 3.900
SRR8316898Complete white stage 0.654
SRR8316899Complete white stage 9.064
SRR8316903Complete white stage 3.770
SRR8316902Silver flowering stage0.989
SRR8316904Silver flowering stage0.842
SRR8316905Silver flowering stage0.742
SRR8316906Gold flowering stage 1.582
SRR8316907Gold flowering stage 1.281
SRR8316908Gold flowering stage 1.224
SRP132670SRR6706286Control4.128
SRR6706287Light intensity 50%3.958
SRR6706288Light intensity 20%3.994
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.424
CNS0095593Slightly white alabastrum(diploid) 24.104
CNS0095594Slightly white alabastrum(diploid) 35.217
CNS0095595Whole white alabastrum(diploid) 26.124
CNS0095596Whole white alabastrum(diploid) 31.622
CNS0095597Whole white alabastrum(diploid) 43.464
CNS0095598Silvery flower (diploied) 119.476
CNS0095599Silvery flower (diploied) 212.437
CNS0095600Silvery flower (diploied) 36.786
CNS0095601Golden flower (diploid) 114.452
CNS0095602Golden flower (diploid) 210.227
CNS0095603Golden flower (diploid) 37.951
CNS0095604Slightly white alabastrum(tetraploid) 14.420
CNS0095605Slightly white alabastrum(tetraploid) 24.080
CNS0095606Slightly white alabastrum(tetraploid) 311.403
CNS0095607Whole white alabastrum(tetraploid) 14.211
CNS0095608Whole white alabastrum(tetraploid) 21.921
CNS0095609Whole white alabastrum(tetraploid) 33.682
CNS0095610Silvery flower (tetraploid) 13.455
CNS0095611Silvery flower (tetraploid) 27.274
CNS0095612Silvery flower (tetraploid) 32.071
CNS0095613Golden flower (tetraploid) 11.111
CNS0095614Golden flower (tetraploid) 22.964
CNS0095615Golden flower (tetraploid) 31.646
CRA001975CRR073297Stem 122.880
CRR073298Stem 214.539
CRR073299Stem 319.200
CRR073300Leaf 15.799
CRR073301Leaf 26.921
CRR073302Leaf 33.338
CRR073303Juvenile bud 14.049
CRR073304Juvenile bud 21.693
CRR073305Juvenile bud 35.052
CRR073306Third green 10.760
CRR073307Third green 20.394
CRR073308Third green 30.859
CRR073309Second white 10.471
CRR073310Second white 20.133
CRR073311Second white 30.289
CRR073312Silver flowering 10.126
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.114
CRR073315Gold flowering 148.641
CRR073316Gold flowering 269.818
CRR073317Gold flowering 353.106
CRR073318Tawny withering 115.465
CRR073319Tawny withering 213.730
CRR073320Tawny withering 310.186