Gene detail

Detail information of GWHGAAZE009627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268789.2	0	PREDICTED: WD repeat-containing protein 26 [Vitis vinifera]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	1E-14	Protein Mut11
trEMBL	tr\|F6HZS9\|F6HZS9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60195.1}
TAIR10	AT5G43920.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114084407	114091295	+
GWHAAZE00000002	mRNA	114084407	114091295	+
GWHAAZE00000002	exon	114084407	114085054	+
GWHAAZE00000002	exon	114086600	114086701	+
GWHAAZE00000002	exon	114089271	114089906	+
GWHAAZE00000002	exon	114090760	114091295	+
GWHAAZE00000002	CDS	114084407	114085054	+
GWHAAZE00000002	CDS	114086600	114086701	+
GWHAAZE00000002	CDS	114089271	114089906	+
GWHAAZE00000002	CDS	114090760	114090945	+
GWHAAZE00000002	three_prime_UTR	114090946	114091295	+

Transcript Sequence
>GWHTAAZE009639 ATGGAGAATTCGCCGACAATGCTAGGTCCAAAAGGCCTAATTAAGAAGCACGAATTTGTAAGAATAATTATCCAGTGTTTATATTCTTTAGGATATGAAAAGTGTGCTGTTAGTTTAGAATCAGAATCTGGTATTTCACACAAATCCGCGGATTTCGAACTGATTGAATCTCATATCCTGAAGGCCAATTGGGATGATTGTATTGATAAGCTTTATGAGATAAAGGATTTGTCGGATGAGACGAGAGCTGCGGCGTTGTTTCTTGTGTTTAAGCAGTGTTTGTTGGAATGTTTGAGCCGTGGGGACGATTGTGTGGCTCTGGCCCTTTTGCAGAAACAGATTTCGGCTTTAAAAGTGGGGAAAGAGAAGGTTCACAAGCTTGCCTGTGGGATACTTTCGCTCAAGGATATGGGGTTGGGTAAAATTGATGATGATGTTGTTTATGAATTGCGAAAAAGATTGGTAGTGGAGTTGGAAAAGGTGCTTCCACCTCCCATTACAGTGCCCGAAAGAAGGTTGGAACACCTTGTTGAGATGGCTGTTGGTGCACAGATAGATTCATGTGTGTATCACAACTCTTTTGACGCAATATCCCTCTATGAGGACCATCTTTGTGGTCGGAACCAGATCCCGACGGCAACCATTCAGATTTTGACTGACCATAAGAATGAAGTTTGGTTTGTCCAATTCTCAAATAATGGGGAATACTTGGCCTCATCATCAAGCGACTGTTCAGCCATTATATGGAAGATTCAGGAAGATGGAAAGGTGACACGAAAACATATTCTACAGAGCCACCAAAACCCTGTTTCGTTTGTAGCATGGAGCCCAGATGATACAATGTTGCTCACATGCGGAACCGGGGAAGTCCTCAAACTGTGGGATGTAGAAACAGGTACATGTAAGCACACATTTGGTGATAACAGCTTCATTGTTAGCTCTTGCGCGTGGTTCCCCGATTCAAGGCGACTGGTCTGTGGCAGCTCGGAAACCGAGAAGGGCATCTACATGTGGGACTGTGAGGGCAATGAAATTAAGGCATGGAGAGGAATGAGGATGCCTAAGGTTTTGGACCTTGCTGTAACGCCAGATGGAGAAAATCTTATCAGTATTTTTTCTGGTAAAGAAATTCGGATCCTGAATGTGGGGACGAATGCAGAGCGGGTCATCTCCGAAAAGCACCCCATCACGTCTCTTTCTGTATCTGGCGATAGTAAGTTTCTTATTGTCAATCTTAACAGCCAAGAGATCCATATGTGGGATGTTGCTGGAAAATGGGAAAAACCGTTGAAGTATAAGGGCCATAGGCAAAACAAGTACGTTATACGCTCCTGTTTTGGTGGCTTGAATAGCACATTTATTGCCAGCGGCAGTGAGAATTCACAGGTGTACATATGGAATCGGCGTAGTTCTAATCCAATCGAAGTATTGTCTGGACATAGGATGACTGTTAACTGTGTGAGCTGGAATCCGAAGAGACCTCAAATGTTAGCATCAGCAAGTGATGATCAAACGATTCGAATTTGGGGACCAACTTGTTCTGAGAAGATACAGTCGAAGAAGCTCATTTGAGCAGGCTAATAAAAAATGTACAAACCCGCGTTTATGTACAGCCCCTAGATTGTCCTTGTTTATTAGTTTGTCAATGCGTTTGTATATATTCGGCTTTCTTTTGTTTCTCCTTTTCGAAATTTTGGCACCTCACCCTTGTAAATCGCCATTTTCCACTACCTGTTTTACCATATCTTCGCGTCATGCACTCTGTTTCCTAGTTATTCAGGTGCCGCGAGTGTCTCTTTTTTTTCCCTTTTTCTTCTTGGTGTTCTTATGAAGCACATGCACAAGCACTTATTGAAGGTGGTGCTGTACAAGCGCGTAGTGTAAATATTTAAAAGGTGGATTAGATGTACACTTCCAAGGGC

Network for GWHGAAZE009627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	215	250	0.00021
PF08662.12	eIF2A	259	345	6.00E-06
PF00400.33	WD40	431	467	0.052
PF00400.33	WD40	472	509	2.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.150
	SRR3591706	second leaf	6.126
	SRR3591707	mature leaf	9.719
	SRR3591708	Shoot apex	9.634
	SRR3591709	Stem	11.433
	SRR3591710	White floral bud	8.368
	SRR3591711	White flower	10.626
	SRR3591712	Green floral bud	6.722
	SRR3591713	Yellow flower	9.227
SRP173429	SRR8316895	Juvenile bud stage	4.287
	SRR8316896	Juvenile bud stage	6.392
	SRR8316897	Juvenile bud stage	2.556
	SRR8316894	Third green stage	2.869
	SRR8316900	Third green stage	6.780
	SRR8316901	Third green stage	5.747
	SRR8316898	Complete white stage	3.745
	SRR8316899	Complete white stage	9.005
	SRR8316903	Complete white stage	6.610
	SRR8316902	Silver flowering stage	4.259
	SRR8316904	Silver flowering stage	7.176
	SRR8316905	Silver flowering stage	3.143
	SRR8316906	Gold flowering stage	9.577
	SRR8316907	Gold flowering stage	7.524
	SRR8316908	Gold flowering stage	10.169
SRP132670	SRR6706286	Control	5.932
	SRR6706287	Light intensity 50%	7.402
	SRR6706288	Light intensity 20%	7.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.048
	CNS0095593	Slightly white alabastrum(diploid) 2	7.601
	CNS0095594	Slightly white alabastrum(diploid) 3	6.563
	CNS0095595	Whole white alabastrum(diploid) 2	6.272
	CNS0095596	Whole white alabastrum(diploid) 3	6.600
	CNS0095597	Whole white alabastrum(diploid) 4	4.758
	CNS0095598	Silvery flower (diploied) 1	9.779
	CNS0095599	Silvery flower (diploied) 2	4.154
	CNS0095600	Silvery flower (diploied) 3	7.776
	CNS0095601	Golden flower (diploid) 1	5.491
	CNS0095602	Golden flower (diploid) 2	7.493
	CNS0095603	Golden flower (diploid) 3	8.532
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.090
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.513
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.016
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.232
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.061
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.079
	CNS0095610	Silvery flower (tetraploid) 1	10.979
	CNS0095611	Silvery flower (tetraploid) 2	10.544
	CNS0095612	Silvery flower (tetraploid) 3	8.014
	CNS0095613	Golden flower (tetraploid) 1	6.548
	CNS0095614	Golden flower (tetraploid) 2	8.177
	CNS0095615	Golden flower (tetraploid) 3	11.424
CRA001975	CRR073297	Stem 1	12.780
	CRR073298	Stem 2	10.105
	CRR073299	Stem 3	7.798
	CRR073300	Leaf 1	9.452
	CRR073301	Leaf 2	8.900
	CRR073302	Leaf 3	6.819
	CRR073303	Juvenile bud 1	8.224
	CRR073304	Juvenile bud 2	5.855
	CRR073305	Juvenile bud 3	8.163
	CRR073306	Third green 1	4.532
	CRR073307	Third green 2	3.923
	CRR073308	Third green 3	4.321
	CRR073309	Second white 1	5.504
	CRR073310	Second white 2	4.676
	CRR073311	Second white 3	5.155
	CRR073312	Silver flowering 1	4.938
	CRR073313	Silver flowering 2	4.794
	CRR073314	Silver flowering 3	2.294
	CRR073315	Gold flowering 1	8.711
	CRR073316	Gold flowering 2	11.462
	CRR073317	Gold flowering 3	7.107
	CRR073318	Tawny withering 1	9.109
	CRR073319	Tawny withering 2	6.489
	CRR073320	Tawny withering 3	5.993