Gene detail

Detail information of GWHGAAZE009628

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652437.1	0	PREDICTED: uncharacterized protein LOC100246400 isoform X2 [Vitis vinifera]
Swissprot	tr\|P93107\|PF20_CHLRE	8E-13	Flagellar WD repeat-containing protein Pf20
trEMBL	tr\|F6HZS8\|F6HZS8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60194.1}
TAIR10	AT1G04140.1	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114093301	114097981	+
GWHAAZE00000002	mRNA	114093301	114097981	+
GWHAAZE00000002	exon	114093301	114093494	+
GWHAAZE00000002	exon	114093574	114093690	+
GWHAAZE00000002	exon	114093777	114093861	+
GWHAAZE00000002	exon	114094911	114095019	+
GWHAAZE00000002	exon	114095144	114095211	+
GWHAAZE00000002	exon	114095327	114095452	+
GWHAAZE00000002	exon	114095532	114096550	+
GWHAAZE00000002	exon	114096770	114096937	+
GWHAAZE00000002	exon	114097067	114097127	+
GWHAAZE00000002	exon	114097582	114097695	+
GWHAAZE00000002	exon	114097826	114097981	+
GWHAAZE00000002	CDS	114093301	114093494	+
GWHAAZE00000002	CDS	114093574	114093690	+
GWHAAZE00000002	CDS	114093777	114093861	+
GWHAAZE00000002	CDS	114094911	114095019	+
GWHAAZE00000002	CDS	114095144	114095211	+
GWHAAZE00000002	CDS	114095327	114095452	+
GWHAAZE00000002	CDS	114095532	114096550	+
GWHAAZE00000002	CDS	114096770	114096937	+
GWHAAZE00000002	CDS	114097067	114097127	+
GWHAAZE00000002	CDS	114097582	114097695	+
GWHAAZE00000002	CDS	114097826	114097981	+

Transcript Sequence
>GWHTAAZE009640 GGTAGAAATGTCTTTCGTTTGTTAGCTCGGAGAGAGATATCTCCCAGAACGAAATGCCTGCAAAGAAGGCAGTGGGGAGAAACATGTAAATATAGTGATGAGTGCTCTTTTGGGATTAGAAGTGAAGCGAAAAGAGATGCAAGGCGCCAACTTTTATCATGGTACTTGCATTGTTCTGACTTGTCTACTTTGCTGGCAGAGGCAGAGTCCTTGAGGCATTTATCAGCAAAATATTGTCCTTTGGTGCCTCCTCCGAGGTCAACTATTGCAGCAGCATTTAGTCCAGACGGGAAAACACTTGCGTCAACTCACGGTGACCACACTGTAAAGATAATTGATTGTCAAACAGGAAGATGTTTAAAGGTGTTGAATGGTCATCGAAGAACACCTTGGGTGGTTAGGTTCCATCCAATGCATCCAGAAATACTTGCAAGTGGAAGCTTGGACCATGAAGTTCGGTTATGGAATGCAAATTCGTCCGAGTGCATTGGATCTCGTGATTTCTACCGTCCTATTGCTTCAATTGCTTTCCATGCGGAAGGGGAGATTCTAGCTGTTGCTTCTGGTCACAAGCTCTATTTATGGCACTACAATAGGAGAGGAGAGTCTTCCTCACCCAAAATTGTGTTGAAGACAAGGCGTTCACTTCGCGCTGTGCATTTTCATCCACATGCTGCTCCATTTCTCTTAACTGCTGAGGTCAATGATCTTGACTCGTCAGATTCATCTATGGCTCGTGCAACATCTCTGGGTTGTTTACAGTATCCTCCTTCTGTATATTTGGCCAACGCAGGTCCAACTGATCATCTTAGTTCGACCGCTGAGCTGCCTCTGATGTCTTTGCCTCTCTTGTATTTACCTTCATTTGCAAGGGACAATTCAAGGATGGATCTAACAGTTGGTAATCTACCTGTTGCTTCAAGTAGCACACAGGTAGAATCTTCTGCTCCATTACCGTTTCAAATAGAAGTAAATGCGACGGAACAGTATGACCCTATGGTGCCTTCCCCAGAAGACTCGTTGGCTAATTGTTATCCCAATGGAACACAAAGCTCTGCATGTGATATGGTAGTTGATGCAATGGAGACCACCGAATTGCAACTTGTAGAGGGCTACCCACCAAGTAGCTCTGCTAACGTGGATAGTTCTGGATCAATTCCTAGTCATCCAGATAGGGTGTCCCTTGAACATAGGCAACACCAGATTTTACCTTCTAGAGACCCAACATCTTGGGACCTACCTTTCCTGCAAGGATGGTTGATGGGTCAAAGTCAAGCTGGTGTGCCATCAACGCTCCCTCATCGTGTTGCCCCACATGAATATTCATCTGCCTATCTTGGAGTTGGTCCTTCCACCTTGAAATCAGATTTGGATATGTGTAATAGGGAGGCTCCAGTGGCTTCTTTAGAAAGATCTGGTGTGCGTGATAATTCTCTGCACCCACCATTGATTTCTGCATCAGGATATGGACAAGGAGCTACTTCTCTTAATAACCTAAATGACAGGGCCCAATCTGTGCCCATAATTAGTAGAATACAGTCCGAACTTGCTGCGTCACTCGCTGCCACAGCAGCGGCGGAGTTGCCTTGCACCGTGAAGCTAAGAATATGGCCTCACGATTTAAAAACTCCTTCTGCCTCACTAACGTCTGAAAAGTGCCGTCTAACAATACCACACGCTGTGCTTTGCAGGTATGGTTTATATTTTTTTGATTGTATTGAAATGGGCGCCCATTTTTCACCTTGTGGGAGATTTTTGGCTGCCTGTGTTGCATGTGTGCTTCCTGAAATCGAAGCTGATCCTGGACTACTAACACAACTCCATCAAGATGCCACTGGTGCCTCAACATCCCCAACTCGGCACCCATTCTCTGCACGCCAAGTTATCTTTGGTTCGGTGCTTATTTCGACAGCAATTAGAGCAGCTCACTGTTTAACTTCAATCCAGTTCTCACCCACCTCTGAGCACATATTGCTTGCTTACGGTAGACGTCACAGTTCTCTTCTTAAAAGCATTGTGATTAATGGGGAAACCTCATTACCCATTTACACAGTCCTAGAGAGCTTTACTCTTTTGCATCCCTGGTTTCAGGTTTACAGAGTTTCAGATATGGAACTTGTGAGTGTGCTTCCTAGTGCAGAAGATGAGGTAAATGTAGCTTGCTTTCATCCTTTGGCTGGAGGAGGTCTAGTCTACGGAACAAAGGTAGGCATTTGA

Network for GWHGAAZE009628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	90	113	0.046
PF00400.33	WD40	117	156	0.0055

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.700
	SRR3591706	second leaf	18.980
	SRR3591707	mature leaf	22.578
	SRR3591708	Shoot apex	30.058
	SRR3591709	Stem	34.067
	SRR3591710	White floral bud	40.390
	SRR3591711	White flower	45.114
	SRR3591712	Green floral bud	39.549
	SRR3591713	Yellow flower	43.290
SRP173429	SRR8316895	Juvenile bud stage	20.273
	SRR8316896	Juvenile bud stage	26.289
	SRR8316897	Juvenile bud stage	15.003
	SRR8316894	Third green stage	13.727
	SRR8316900	Third green stage	35.173
	SRR8316901	Third green stage	33.405
	SRR8316898	Complete white stage	16.286
	SRR8316899	Complete white stage	42.861
	SRR8316903	Complete white stage	26.174
	SRR8316902	Silver flowering stage	18.104
	SRR8316904	Silver flowering stage	25.100
	SRR8316905	Silver flowering stage	11.981
	SRR8316906	Gold flowering stage	40.724
	SRR8316907	Gold flowering stage	34.669
	SRR8316908	Gold flowering stage	39.761
SRP132670	SRR6706286	Control	34.045
	SRR6706287	Light intensity 50%	38.709
	SRR6706288	Light intensity 20%	42.044
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.429
	CNS0095593	Slightly white alabastrum(diploid) 2	18.656
	CNS0095594	Slightly white alabastrum(diploid) 3	16.900
	CNS0095595	Whole white alabastrum(diploid) 2	18.613
	CNS0095596	Whole white alabastrum(diploid) 3	17.950
	CNS0095597	Whole white alabastrum(diploid) 4	19.331
	CNS0095598	Silvery flower (diploied) 1	19.903
	CNS0095599	Silvery flower (diploied) 2	16.540
	CNS0095600	Silvery flower (diploied) 3	36.955
	CNS0095601	Golden flower (diploid) 1	19.381
	CNS0095602	Golden flower (diploid) 2	37.022
	CNS0095603	Golden flower (diploid) 3	35.192
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.605
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.151
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.998
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.120
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.503
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.675
	CNS0095610	Silvery flower (tetraploid) 1	28.850
	CNS0095611	Silvery flower (tetraploid) 2	31.869
	CNS0095612	Silvery flower (tetraploid) 3	23.088
	CNS0095613	Golden flower (tetraploid) 1	11.738
	CNS0095614	Golden flower (tetraploid) 2	19.581
	CNS0095615	Golden flower (tetraploid) 3	27.481
CRA001975	CRR073297	Stem 1	45.882
	CRR073298	Stem 2	39.999
	CRR073299	Stem 3	38.346
	CRR073300	Leaf 1	59.075
	CRR073301	Leaf 2	53.578
	CRR073302	Leaf 3	49.632
	CRR073303	Juvenile bud 1	53.962
	CRR073304	Juvenile bud 2	41.161
	CRR073305	Juvenile bud 3	55.492
	CRR073306	Third green 1	28.796
	CRR073307	Third green 2	23.176
	CRR073308	Third green 3	26.680
	CRR073309	Second white 1	24.361
	CRR073310	Second white 2	24.252
	CRR073311	Second white 3	31.023
	CRR073312	Silver flowering 1	29.706
	CRR073313	Silver flowering 2	27.425
	CRR073314	Silver flowering 3	33.456
	CRR073315	Gold flowering 1	15.887
	CRR073316	Gold flowering 2	33.389
	CRR073317	Gold flowering 3	22.125
	CRR073318	Tawny withering 1	40.433
	CRR073319	Tawny withering 2	33.734
	CRR073320	Tawny withering 3	33.716