Gene detail

Detail information of GWHGAAZE009642

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03789.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FNC7\|SUVR2_ARATH	5E-157	Histone-lysine N-methyltransferase SUVR2
trEMBL	tr\|A0A068U6I8\|A0A068U6I8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03789.1}
TAIR10	AT5G43990.2	3E-130	SET-domain containing protein lysine methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114359516	114366104	+
GWHAAZE00000002	mRNA	114359516	114366104	+
GWHAAZE00000002	exon	114359516	114359698	+
GWHAAZE00000002	exon	114359818	114359853	+
GWHAAZE00000002	exon	114359926	114360466	+
GWHAAZE00000002	exon	114361897	114363092	+
GWHAAZE00000002	exon	114363202	114363467	+
GWHAAZE00000002	exon	114364539	114364605	+
GWHAAZE00000002	exon	114364758	114364808	+
GWHAAZE00000002	exon	114365485	114365581	+
GWHAAZE00000002	exon	114365727	114366104	+
GWHAAZE00000002	CDS	114359516	114359698	+
GWHAAZE00000002	CDS	114359818	114359853	+
GWHAAZE00000002	CDS	114359926	114360466	+
GWHAAZE00000002	CDS	114361897	114363092	+
GWHAAZE00000002	CDS	114363202	114363467	+
GWHAAZE00000002	CDS	114364539	114364605	+
GWHAAZE00000002	CDS	114364758	114364808	+
GWHAAZE00000002	CDS	114365485	114365581	+
GWHAAZE00000002	CDS	114365727	114365749	+
GWHAAZE00000002	three_prime_UTR	114365750	114366104	+

Transcript Sequence
>GWHTAAZE009654 ATGGCACCTGATCCAAGAGCTATGAATGCCTTTCGTGCTATGAGGGATATTGGAATTCCTGAAGAAAAAACAAAACCTGTCTTGAAAGTTCTTTTAAAATTGTATGAAAAAAAGTGGGAATACATCGAGGAAGAAAATTATAGAGTCCTTGCAGATGCTATATTTGATGCTGAGGAAATTGAGGGAGCCGAAATTGAGAAGCAGCATGAGAATACTCAACCTGGGGAAGATTTAGAGGAAGAAACTCCAGTAGAAGAGGAGAATGAACGACCCTTGAAAAGGTTACGCTTAAGACACCAAGAGGGTCAAGCTTCACCTTCTTTGAGTAACTCTCGAGCTGGTACTTCACTTAAACGGCCCATAGGGGAGCATGATGAACTACCAGAAACTTGTACAGTTCCCCTTATGCCCAACTCAGAAATCACAAGGGCTGAATTGCGGCCAATATCACCCCACCCTGTGAGTAAAAACAAGGGAAAGCAAATTGACGTCACAGTGAGAAGTGTATCTAATTCATCTCCTAGGAATCTAAGAGGCAGGGAAAAAGAACCTCCCGCACCTCAAAATGATCCTCGGAAGAAGAAGAGAATTTCTGACGGTTCATCTAATGCAGTGGTCTTGAAAGAGCCAAAGGTTGGCACGGGGCTTAATCTTTTCCCCAAACAGAAGGTGCCTGATCGTGCTCTCATCAAGCCCAAAGATGAGCCTTTTACAGAGGAAATGCCACAATTGGAGCTTCCTATTACAATGATCCATCCGGAGCGATTGCCCAATGGGAATTCTTCAATTGGAAATGGTTTGCTTGAAGAACCTGAGAGTCCTGAACCTATAGGCTCCCAGTCTATAGGGGGTCTTCACAAAAGTGATGATATTCCAGCTTCATCAAGTGAAGAAAGACCTAGTTCCGAGCTTGCAATCATCCCGAATGTATCAACTACTATCCTAGGGATTGCTTCCTCGGCCTTGGGAGAGGTGAAAGTATCACTGAGCTGTAACTCTGCTCCTGGAAAACCCAACTTTAGTTTGCCTTGTCTTGATACTGTTCTAAAAGTAGTGGAGGATAAATGTCTCAGATCTTACAAAGTCAATGACCTAAATTTTTCCATGGCGAAATTGATGAAGGATATGTGTGCTTGTATTTTGGAACTTGGAACTGACTCCAATAATGATCTGCAAGCTGCCATAAATGTTTCACAAACTTTTGGTTTATCGAAAAAATGCTGTGCGGCTGATGCTCCAAGTGCTAACCATACCCCATCGAGTCCCTCAAATGGAATGGTATATACTGAAGTGTCTCTACCTTGCAATGGTGTGGATGCCTGCACACAATCAGATAGGAATATTAGCCAGAATGAAGGTGAAATTGATAATGTGATGGAACATAATGGCTTCGATCACACAGATTCAAGAAGTTTGGTTGATGTTGAGCAGTGTCTGGTAACTCTTGATGATACGAGGTGTCCCCATGATTTTAGTGACATAGCCAAAGGACAGGAAAGAGTTAAAATTCCATTGGTAAATGAAATCAACAGTGAATCTCCACCGTCCTTTCACTACATACCCCAAAATGTAGTTTTAGAAAAAGCTTATCTGAATTTCTCTATGGCTCGTATTGGAGATGATAATTGTTGTTCGGCCTGTTCTGGTGATTGTCTATTATCATCAACTCCTTGTGCATGTTTACATGAAACTGGTGGTGAATTTGCATATACGTCAGAAGGACTTGTTAAGGAGAAATTTTTAGATGAGTGTATTTCTATGAACCGTGACCCTGAGAAACACTGCCACTGCTATTGTGAAGAATGTCCACTGGAAAGATCTAAAAACGAGGGTATTTTAGAACCATGCAAAGGCCATTTAGTGAGGAGGTTCATCAAAGAATGTTGGTGGAAATGCGGATGCAGTAAACTCTGTGGCAATCGAGTGGTACAGCGGGGCATAAATCGCAAATTGCAGGTGTTTATGACATCTGGCGTAAAAGGATGGGGTCTTCGTACCCTGGAGGACCTTCCTAAAGGTGCATTTGTCTGTGAATATGTTGGAGAAGTATTAACAAATGCAGAGCTCTATGATCGAGTTTCACGTAGGCCAAAGAACGAGGAACATGCATATCCTGTGCTGCTTGATGCTGATTGGGGTTCAGAAGAATTCTTAAAGGATGAAGAAGCTCTTTGTTTGGATGCTACTTATTATGGGAATGTTGCAAGGTTCATCAATCACAGGTGTTTTGATTCAAACTTAGTTGAGATCCCAGTGGAAGTGGAGACACCGGATCACCACTACTATCATCTTGCCTTCTTCACTGCAAGAAAGGTAGCAGCTTTGGAAGAGCTAACTTGGGATTATGGAATTGATTTCGATGATCGTGACCATCCTGTCAAGGCATTTCGATGCCGGTGCGGAAGCAAGTTCTGCCGAAACAGGAAACGGTCAAGAAGAAGATCTTCAGCGAGGAAATGAATGGCAGGGACAAGCTCATTACTAGATTTTTCTGAAGTTACGGCATTGATGTTGATGAAAGGAAACCAGCTAATTACACCATTTGTGCGTATGTTCACTGCAAGTGTCATATGGCTGGTAATTGTTGGATTTATTGATAGATGCTGCGCTGTGTTGTGTTTGTTTATGCATGTATATGTAAGCTTTAGATGGCCTACTGAAAGAGAGTTTTTGGGCTTGCTCCTGCTTTTAAGAGCTGGACTTTTAGAGCAACAATGGAGCAATATACAGACTCCTTTCTTTTATCTTTGTTATTCAGACTTGAGATTAGATATTTGAAATATTAAAACCCCCCTCCCCTTCTCTCATTGGTTAC

Network for GWHGAAZE009642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10440.10	WIYLD	5	59	6.10E-21
PF05033.17	Pre-SET	494	641	1.10E-16
PF00856.29	SET	661	783	4.00E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.767
	SRR3591706	second leaf	6.723
	SRR3591707	mature leaf	5.826
	SRR3591708	Shoot apex	16.975
	SRR3591709	Stem	9.981
	SRR3591710	White floral bud	4.687
	SRR3591711	White flower	5.440
	SRR3591712	Green floral bud	9.647
	SRR3591713	Yellow flower	3.512
SRP173429	SRR8316895	Juvenile bud stage	7.255
	SRR8316896	Juvenile bud stage	7.652
	SRR8316897	Juvenile bud stage	6.395
	SRR8316894	Third green stage	3.908
	SRR8316900	Third green stage	8.695
	SRR8316901	Third green stage	8.431
	SRR8316898	Complete white stage	1.569
	SRR8316899	Complete white stage	9.134
	SRR8316903	Complete white stage	3.428
	SRR8316902	Silver flowering stage	2.929
	SRR8316904	Silver flowering stage	4.170
	SRR8316905	Silver flowering stage	1.597
	SRR8316906	Gold flowering stage	6.095
	SRR8316907	Gold flowering stage	5.035
	SRR8316908	Gold flowering stage	5.924
SRP132670	SRR6706286	Control	5.467
	SRR6706287	Light intensity 50%	5.536
	SRR6706288	Light intensity 20%	6.894
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.413
	CNS0095593	Slightly white alabastrum(diploid) 2	7.248
	CNS0095594	Slightly white alabastrum(diploid) 3	6.363
	CNS0095595	Whole white alabastrum(diploid) 2	5.175
	CNS0095596	Whole white alabastrum(diploid) 3	4.752
	CNS0095597	Whole white alabastrum(diploid) 4	4.195
	CNS0095598	Silvery flower (diploied) 1	6.509
	CNS0095599	Silvery flower (diploied) 2	5.548
	CNS0095600	Silvery flower (diploied) 3	4.525
	CNS0095601	Golden flower (diploid) 1	4.586
	CNS0095602	Golden flower (diploid) 2	2.905
	CNS0095603	Golden flower (diploid) 3	3.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.803
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.202
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.719
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.993
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.230
	CNS0095610	Silvery flower (tetraploid) 1	5.508
	CNS0095611	Silvery flower (tetraploid) 2	5.674
	CNS0095612	Silvery flower (tetraploid) 3	4.462
	CNS0095613	Golden flower (tetraploid) 1	1.535
	CNS0095614	Golden flower (tetraploid) 2	3.115
	CNS0095615	Golden flower (tetraploid) 3	1.362
CRA001975	CRR073297	Stem 1	8.299
	CRR073298	Stem 2	6.781
	CRR073299	Stem 3	4.940
	CRR073300	Leaf 1	8.749
	CRR073301	Leaf 2	8.739
	CRR073302	Leaf 3	5.328
	CRR073303	Juvenile bud 1	3.750
	CRR073304	Juvenile bud 2	2.522
	CRR073305	Juvenile bud 3	5.672
	CRR073306	Third green 1	0.515
	CRR073307	Third green 2	0.118
	CRR073308	Third green 3	0.388
	CRR073309	Second white 1	0.545
	CRR073310	Second white 2	0.831
	CRR073311	Second white 3	0.720
	CRR073312	Silver flowering 1	0.366
	CRR073313	Silver flowering 2	0.531
	CRR073314	Silver flowering 3	0.449
	CRR073315	Gold flowering 1	3.210
	CRR073316	Gold flowering 2	5.185
	CRR073317	Gold flowering 3	3.163
	CRR073318	Tawny withering 1	4.433
	CRR073319	Tawny withering 2	5.776
	CRR073320	Tawny withering 3	6.279