Gene detail

Detail information of GWHGAAZE009686

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010262320.1	2.23376E-61	PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	2E-40	Myb-related protein Myb4
trEMBL	tr\|A0A061ELW6\|A0A061ELW6_THECC	3E-61	Myb domain protein 13, putative {ECO:0000313\|EMBL:EOY06040.1}
TAIR10	AT3G23250.1	3E-35	myb domain protein 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	115197551	115199337	-
GWHAAZE00000002	mRNA	115197551	115199337	-
GWHAAZE00000002	exon	115197551	115198094	-
GWHAAZE00000002	exon	115199135	115199337	-
GWHAAZE00000002	CDS	115199135	115199337	-
GWHAAZE00000002	CDS	115197551	115198094	-

Transcript Sequence
>GWHTAAZE009698 ATGGGGAGAGCACCATGCTGTGAGAAGATGGGTTTGAAGAGAGGAGCTTGGACTAGGGAAGAAGATCAGATACTTACCGACTACATTCGTCAACACGGCCATGGCAACTGGCGCGCTCTTCCTAAACAAGCTGGTACTCTTACTTTACTTTACTTTACTTGTAAATCTTTACTTGTTTCCTCCAGACCATCGGATCGATCGAGATGGTCAGCTATTGCAGCAAAATTACCCGGTCGGACTGACAATGAAATAAAAAACGTTTGGCACACCCACTTGAAAAAGAAAATCCAAACCACCACTAATCTTGCAACTAAACACACCTCTTCCTCTGACAGCAGCACTACTACTAGTTCCAAATTTGAAGAACAAGATAATGAACAAGATCCAAATTTTACCACCCAAACAAGACTTAAAGATCAACAACCAAATTCCCCACAACCATCCTCTAGTGAAATCTCCTCCGTCACCACAACCACCACCACTACCACCGGAGAAGACAATGCCCCTGCATCGACGAAGGACAATTCTTTTGACAATTTCCCAGAAGTGGATGAGAGCTTTTGGACGGAAGTGTTTTCTGGGGAAAATTCTGACCAGTTTCTGATGGTCGATGGGGAATTGCAACTTCATGGTATGGAATATGATTATGGCTCTAATTCAAAGGGGAATGATGAAATGGACTTTTGGTATGACATTTTCACAAGAGCTGGGGATTTGCCTGAATTGCCGGAATTCGAAGGCTTGTAA

Network for GWHGAAZE009686

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	48	1.40E-07
PF00249.32	Myb_DNA-binding	67	92	2.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.885
	SRR3591706	second leaf	3.637
	SRR3591707	mature leaf	4.337
	SRR3591708	Shoot apex	5.446
	SRR3591709	Stem	49.720
	SRR3591710	White floral bud	31.847
	SRR3591711	White flower	124.489
	SRR3591712	Green floral bud	3.200
	SRR3591713	Yellow flower	151.621
SRP173429	SRR8316895	Juvenile bud stage	17.646
	SRR8316896	Juvenile bud stage	2.194
	SRR8316897	Juvenile bud stage	18.559
	SRR8316894	Third green stage	2.414
	SRR8316900	Third green stage	1.442
	SRR8316901	Third green stage	2.855
	SRR8316898	Complete white stage	1.743
	SRR8316899	Complete white stage	13.998
	SRR8316903	Complete white stage	5.889
	SRR8316902	Silver flowering stage	24.936
	SRR8316904	Silver flowering stage	33.502
	SRR8316905	Silver flowering stage	16.969
	SRR8316906	Gold flowering stage	64.832
	SRR8316907	Gold flowering stage	71.409
	SRR8316908	Gold flowering stage	87.672
SRP132670	SRR6706286	Control	3.025
	SRR6706287	Light intensity 50%	4.857
	SRR6706288	Light intensity 20%	2.828
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.583
	CNS0095593	Slightly white alabastrum(diploid) 2	23.324
	CNS0095594	Slightly white alabastrum(diploid) 3	29.873
	CNS0095595	Whole white alabastrum(diploid) 2	22.415
	CNS0095596	Whole white alabastrum(diploid) 3	1.842
	CNS0095597	Whole white alabastrum(diploid) 4	22.937
	CNS0095598	Silvery flower (diploied) 1	90.646
	CNS0095599	Silvery flower (diploied) 2	90.099
	CNS0095600	Silvery flower (diploied) 3	66.618
	CNS0095601	Golden flower (diploid) 1	105.770
	CNS0095602	Golden flower (diploid) 2	103.458
	CNS0095603	Golden flower (diploid) 3	95.905
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.568
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.198
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.733
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.816
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.198
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.703
	CNS0095610	Silvery flower (tetraploid) 1	57.322
	CNS0095611	Silvery flower (tetraploid) 2	28.176
	CNS0095612	Silvery flower (tetraploid) 3	38.914
	CNS0095613	Golden flower (tetraploid) 1	81.283
	CNS0095614	Golden flower (tetraploid) 2	68.695
	CNS0095615	Golden flower (tetraploid) 3	40.611
CRA001975	CRR073297	Stem 1	6.340
	CRR073298	Stem 2	3.450
	CRR073299	Stem 3	2.846
	CRR073300	Leaf 1	2.251
	CRR073301	Leaf 2	2.884
	CRR073302	Leaf 3	1.353
	CRR073303	Juvenile bud 1	2.708
	CRR073304	Juvenile bud 2	5.213
	CRR073305	Juvenile bud 3	1.967
	CRR073306	Third green 1	4.395
	CRR073307	Third green 2	10.143
	CRR073308	Third green 3	11.493
	CRR073309	Second white 1	7.862
	CRR073310	Second white 2	12.605
	CRR073311	Second white 3	9.785
	CRR073312	Silver flowering 1	54.379
	CRR073313	Silver flowering 2	54.769
	CRR073314	Silver flowering 3	68.314
	CRR073315	Gold flowering 1	2.409
	CRR073316	Gold flowering 2	18.104
	CRR073317	Gold flowering 3	15.885
	CRR073318	Tawny withering 1	19.800
	CRR073319	Tawny withering 2	125.296
	CRR073320	Tawny withering 3	19.748