Gene detail

Detail information of GWHGAAZE009695

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04359.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068U841\|A0A068U841_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04359.1}
TAIR10	AT3G11950.2	5E-132	TRAF-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	115346881	115348583	+
GWHAAZE00000002	mRNA	115346881	115348583	+
GWHAAZE00000002	exon	115346881	115347804	+
GWHAAZE00000002	exon	115348026	115348583	+
GWHAAZE00000002	CDS	115346881	115347804	+
GWHAAZE00000002	CDS	115348026	115348583	+

Transcript Sequence
>GWHTAAZE009707 ATGAATCCCCCTGTAATTGATGGGAATGTCGAATCAGAAAAGCTTGAAGAAGATAAAAAGGAAGGGCCCATGTACCATTGTGAACTTTTTGATACAGAAGTTATTCACAAAATAGCACAAGCATTTCTCCCAGGATTAGCCTCAGCCTGTGTTGACAACACCACCGGTGGTATCTTCAGGAGCCCCGGGTCGGTGGCTGTTGAAATTAGGAAAGAGATGGTTGATTATTTAAATCAAAGAAGCGAAAATTTTGTGGCAGAATCGGTAGTTTTAGAAGGTGGCCCAGATACTGAGGTGTCTGACCATCCTTATGATATTATTGCTGATTTCGTTGATGATTTCGCAAGTTCAAAGAGGAACTTTTTTAGCCGGGTTTCAGGGTGGGTGCTGAGTGAAAGGAGAGAGGAAAGGATAGATGATTTTGTACAAGAACTGGAATTAAACGGGTTTTGGTTGCTTCAGAGAAGGGAAGCTGTTGCTCAATCTCTTGTCAAGAATGTCGACTTCAAGAACACTTATCACTGCAATATGAAGTTCAAAACTCCAGAAGAGCTTACTGAGCACGTTGCCCAATGCGGTTTTAGGACTGTGAATTGCAGAAATGAAGGGTGTAACACCATATTTACTGCGGCTCACATGGAGAACCATGATTCTACATGTGATTTCAAGATACTTCCGTGTGAACAGAAGTGCTCGGATGAGATTATGAGGCGGGATATGGACAGGCACTGTATAACTGTTTGTCCAATGAAGCTTGTGAATTGTCCCTTTTACGCTGTGGGGTGCCAGGCTACTGTACCTCGGTGTATGGTTGAAGAACATAACACTGAGAATCTCCATCATCACACGCTCTGTATTCTTCAAGGTATTTACAAGGAAGCTCCTGCAGAGGATCTGGAAGAAAGGCTTGAACAACTGGAAAAGTCGGCAAATCCTGGGCAACTATCTGGAGCGGCTCGGAATGTGAGATCCTTAACCAATGTGGTAAAAAGGATTGATGCAAAGCTTGCGCCATTAGTCATCAAAACCAAGCCAAAGGAAGAAGAAGAAGAAGAAGAAGAGTCTGCCGATTCACCAGCAAAAAAAGAACTCACAGAGTCGCCTAGTAAAAAGGAAGAAAAAACGGAGTCACCAACCAAAGACAGAAAGAGCACAGAATCACCTAGCAAAAAGGAAGAAATAATGGAGTCACCCACCAAAGACAGAAAAAGCACAGATTCATCAACCAAAGAGAGGAAGAGCACAGAGTCGCTCCCCAAAGAGAGGAAGAGCACAGAGTCACCTACCAAATCGGAAGAAAATATGGAGTCACCCACCAAAGACCGAAAGAGCACAGAGTCACCTACCAATAAGGAAGAATCCGCCAATTCACCTGCCAAAAGTGAGGAGCCTATCGATTCACCTGTCAAAAAAGAAGAATCCTCAGAGTCGCCCACCAAAAAAGAAAAGCATAAAGAATCACCTATTGCGAATGAAAACTGA

Network for GWHGAAZE009695

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02176.19	zf-TRAF	216	274	7.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.129
	SRR3591706	second leaf	1.059
	SRR3591707	mature leaf	0.619
	SRR3591708	Shoot apex	1.551
	SRR3591709	Stem	2.301
	SRR3591710	White floral bud	7.089
	SRR3591711	White flower	1.165
	SRR3591712	Green floral bud	34.831
	SRR3591713	Yellow flower	0.294
SRP173429	SRR8316895	Juvenile bud stage	10.452
	SRR8316896	Juvenile bud stage	31.492
	SRR8316897	Juvenile bud stage	16.230
	SRR8316894	Third green stage	11.494
	SRR8316900	Third green stage	32.686
	SRR8316901	Third green stage	33.813
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.037
	SRR8316903	Complete white stage	0.403
	SRR8316902	Silver flowering stage	0.139
	SRR8316904	Silver flowering stage	0.340
	SRR8316905	Silver flowering stage	0.067
	SRR8316906	Gold flowering stage	0.144
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.089
SRP132670	SRR6706286	Control	15.478
	SRR6706287	Light intensity 50%	14.023
	SRR6706288	Light intensity 20%	11.850
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.333
	CNS0095593	Slightly white alabastrum(diploid) 2	14.833
	CNS0095594	Slightly white alabastrum(diploid) 3	25.121
	CNS0095595	Whole white alabastrum(diploid) 2	24.836
	CNS0095596	Whole white alabastrum(diploid) 3	33.980
	CNS0095597	Whole white alabastrum(diploid) 4	23.179
	CNS0095598	Silvery flower (diploied) 1	1.161
	CNS0095599	Silvery flower (diploied) 2	0.578
	CNS0095600	Silvery flower (diploied) 3	0.559
	CNS0095601	Golden flower (diploid) 1	0.518
	CNS0095602	Golden flower (diploid) 2	1.282
	CNS0095603	Golden flower (diploid) 3	0.713
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.865
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.635
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.511
	CNS0095610	Silvery flower (tetraploid) 1	0.231
	CNS0095611	Silvery flower (tetraploid) 2	0.930
	CNS0095612	Silvery flower (tetraploid) 3	2.202
	CNS0095613	Golden flower (tetraploid) 1	0.175
	CNS0095614	Golden flower (tetraploid) 2	0.148
	CNS0095615	Golden flower (tetraploid) 3	1.295
CRA001975	CRR073297	Stem 1	22.515
	CRR073298	Stem 2	25.832
	CRR073299	Stem 3	13.983
	CRR073300	Leaf 1	36.495
	CRR073301	Leaf 2	30.342
	CRR073302	Leaf 3	22.096
	CRR073303	Juvenile bud 1	22.654
	CRR073304	Juvenile bud 2	17.106
	CRR073305	Juvenile bud 3	1.210
	CRR073306	Third green 1	2.900
	CRR073307	Third green 2	2.049
	CRR073308	Third green 3	2.208
	CRR073309	Second white 1	0.124
	CRR073310	Second white 2	0.586
	CRR073311	Second white 3	0.615
	CRR073312	Silver flowering 1	1.724
	CRR073313	Silver flowering 2	2.978
	CRR073314	Silver flowering 3	0.824
	CRR073315	Gold flowering 1	2.128
	CRR073316	Gold flowering 2	1.787
	CRR073317	Gold flowering 3	0.875
	CRR073318	Tawny withering 1	3.306
	CRR073319	Tawny withering 2	3.160
	CRR073320	Tawny withering 3	3.631