Detail information of GWHGAAZE009698


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO68461.10hypothetical protein CISIN_1g002844mg [Citrus sinensis]
trEMBLtr|A0A067FM60|A0A067FM60_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO68463.1}
TAIR10AT2G31260.10autophagy 9 (APG9)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene115365408115369566-
GWHAAZE00000002mRNA115365408115369566-
GWHAAZE00000002exon115369040115369566-
GWHAAZE00000002exon115368567115368887-
GWHAAZE00000002exon115368238115368460-
GWHAAZE00000002exon115367504115367683-
GWHAAZE00000002exon115367145115367377-
GWHAAZE00000002exon115366555115366677-
GWHAAZE00000002exon115366313115366423-
GWHAAZE00000002exon115365408115366233-
GWHAAZE00000002CDS115369040115369566-
GWHAAZE00000002CDS115368567115368887-
GWHAAZE00000002CDS115368238115368460-
GWHAAZE00000002CDS115367504115367683-
GWHAAZE00000002CDS115367145115367377-
GWHAAZE00000002CDS115366555115366677-
GWHAAZE00000002CDS115366313115366423-
GWHAAZE00000002CDS115365408115366233-
Transcript Sequence

Network for GWHGAAZE009698

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04109.17APG9655411.70E-141
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17907ATG9 Autophagy - animal map04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Mitophagy - animalmap04137

Gene Ontology

GO term OntologyName
GO:0006914biological_processautophagy

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.950
SRR3591706second leaf5.874
SRR3591707mature leaf5.477
SRR3591708Shoot apex9.863
SRR3591709Stem17.776
SRR3591710White floral bud22.566
SRR3591711White flower25.685
SRR3591712Green floral bud10.025
SRR3591713Yellow flower21.941
SRP173429 SRR8316895Juvenile bud stage 6.753
SRR8316896Juvenile bud stage 8.050
SRR8316897Juvenile bud stage 4.428
SRR8316894Third green stage 3.896
SRR8316900Third green stage 10.327
SRR8316901Third green stage 9.374
SRR8316898Complete white stage 7.584
SRR8316899Complete white stage 12.773
SRR8316903Complete white stage 12.860
SRR8316902Silver flowering stage9.134
SRR8316904Silver flowering stage14.515
SRR8316905Silver flowering stage6.282
SRR8316906Gold flowering stage 19.685
SRR8316907Gold flowering stage 19.365
SRR8316908Gold flowering stage 17.987
SRP132670SRR6706286Control8.358
SRR6706287Light intensity 50%8.608
SRR6706288Light intensity 20%8.408
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.669
CNS0095593Slightly white alabastrum(diploid) 26.962
CNS0095594Slightly white alabastrum(diploid) 34.897
CNS0095595Whole white alabastrum(diploid) 24.602
CNS0095596Whole white alabastrum(diploid) 33.821
CNS0095597Whole white alabastrum(diploid) 44.607
CNS0095598Silvery flower (diploied) 111.372
CNS0095599Silvery flower (diploied) 29.182
CNS0095600Silvery flower (diploied) 319.360
CNS0095601Golden flower (diploid) 110.395
CNS0095602Golden flower (diploid) 221.696
CNS0095603Golden flower (diploid) 318.766
CNS0095604Slightly white alabastrum(tetraploid) 15.183
CNS0095605Slightly white alabastrum(tetraploid) 25.480
CNS0095606Slightly white alabastrum(tetraploid) 311.226
CNS0095607Whole white alabastrum(tetraploid) 14.913
CNS0095608Whole white alabastrum(tetraploid) 23.277
CNS0095609Whole white alabastrum(tetraploid) 37.708
CNS0095610Silvery flower (tetraploid) 120.264
CNS0095611Silvery flower (tetraploid) 222.523
CNS0095612Silvery flower (tetraploid) 341.085
CNS0095613Golden flower (tetraploid) 113.158
CNS0095614Golden flower (tetraploid) 218.495
CNS0095615Golden flower (tetraploid) 333.417
CRA001975CRR073297Stem 19.638
CRR073298Stem 27.332
CRR073299Stem 37.658
CRR073300Leaf 19.078
CRR073301Leaf 29.704
CRR073302Leaf 37.517
CRR073303Juvenile bud 16.244
CRR073304Juvenile bud 24.760
CRR073305Juvenile bud 38.520
CRR073306Third green 110.725
CRR073307Third green 28.214
CRR073308Third green 39.419
CRR073309Second white 110.683
CRR073310Second white 214.610
CRR073311Second white 316.117
CRR073312Silver flowering 112.717
CRR073313Silver flowering 214.136
CRR073314Silver flowering 38.661
CRR073315Gold flowering 13.189
CRR073316Gold flowering 26.605
CRR073317Gold flowering 32.134
CRR073318Tawny withering 19.034
CRR073319Tawny withering 28.229
CRR073320Tawny withering 39.092