Gene detail

Detail information of GWHGAAZE009704

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP26554.1	0	hypothetical protein JCGZ_17712 [Jatropha curcas]
Swissprot	tr\|P0C7P8\|LHWL1_ARATH	5E-89	Transcription factor EMB1444
trEMBL	tr\|A0A067K423\|A0A067K423_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26554.1}
TAIR10	AT1G06150.1	2E-73	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	115428603	115433222	+
GWHAAZE00000002	mRNA	115428603	115433222	+
GWHAAZE00000002	exon	115428603	115428697	+
GWHAAZE00000002	exon	115429438	115429608	+
GWHAAZE00000002	exon	115429773	115429857	+
GWHAAZE00000002	exon	115429998	115430039	+
GWHAAZE00000002	exon	115430567	115430626	+
GWHAAZE00000002	exon	115430856	115430969	+
GWHAAZE00000002	exon	115431054	115431974	+
GWHAAZE00000002	exon	115432049	115432150	+
GWHAAZE00000002	exon	115432365	115432505	+
GWHAAZE00000002	exon	115432725	115432850	+
GWHAAZE00000002	exon	115433029	115433222	+
GWHAAZE00000002	CDS	115428603	115428697	+
GWHAAZE00000002	CDS	115429438	115429608	+
GWHAAZE00000002	CDS	115429773	115429857	+
GWHAAZE00000002	CDS	115429998	115430039	+
GWHAAZE00000002	CDS	115430567	115430626	+
GWHAAZE00000002	CDS	115430856	115430969	+
GWHAAZE00000002	CDS	115431054	115431974	+
GWHAAZE00000002	CDS	115432049	115432150	+
GWHAAZE00000002	CDS	115432365	115432505	+
GWHAAZE00000002	CDS	115432725	115432850	+
GWHAAZE00000002	CDS	115433029	115433112	+
GWHAAZE00000002	three_prime_UTR	115433113	115433222	+

Transcript Sequence
>GWHTAAZE009716 ATGGGTAGTCAATTGCACCAAGCACTCAGGATACTGTGTTCCAACACTGCGTGGAATTATGCTGTCTTTTGGAAACTCGAACACCAAGCTCGAATGATGTTGACTTGGGAGGATGCCTACTTCGACGACCAAGAGCAACATGACCTTTCCGAAAACAACCAGTTTGTTGACATAGTGGGCAATTTGTACAATGGGCGTAATTCACACGAGTCTCTTGCATTAGCTTTGGCGATGATGTCATATCATGTATATTCACTTGGCGAGGGGATTGTTGGACAGGTTGCAGTTACTGGTAAGCACCTTTGGATAACTTCAGATACAAATGTAACTGGTTCTTGCTCATTCTTTGAGTACTGTGATGAGTGGGAAACTCAGTTGTCAGCGGGAATTAGGACCATTGCTGTTGTAGCTGTCATTCCACATGGAGTTGTACAGCTAGGCTCTTTACATAAAATTGCTGAGGATCTGAAGCAGGTGGAACTTATTAGAGATATCTTTTTTGAGCTTCAAGATCCCTCACTGGGGTATATTCCCGTACCATGTAGTATGGATAGTTCCTCTTGTCTGTCAGATGTATCTACAAGAGGCTCACAAGCAGGCGCGTTTCTTCACTGCATGAACAATGAAGACAGAAGTATAAAGAATAACATGACAGAATTTCCGTCTTTTCGAAAATCTGTTCCTTGTTCTTCCATTGTCCCACTACCTGGAGCTTATCCAAAGAAGACAGTTGAAGTGATCAATAAGCACGCAGGTCCCGGATACTCAATATCAGGAAAGACTAATAGCTTTAGGGATGTGGGACCAGGTTCAGAATATAAGGATGATACCTTTGGTAACACTCAAAATGAGGAATTGTGTGTGCCTGAACCTTCAAAATTACAAAGCCCAAAAGATATAGAAATGAAGTTGGCGCTTGAAACAGAGATTAATCATATGGACACATTGAATGCGTCTTTCAGATTTTCAGCTGGCCGTGAGCTGTATGAAGTACTAGGACCCTCATTTATAGAACAGCATATCCATGACGATTGGGAGAAAGAAAAGACCAAAACAGTTACTGAGATGCTGGTAGAAGGAATGAGCAGTAGTGATTTGTTAAGGACGAACCCTAGCTCGGACCATCTTCTTGAAGCAGTAGTGGCTAATGTTTGCCACAGTACTGGCAGTAATGTTAATAATGCAAAATCAATCTGTAAATCATTAAAGTCTCCCTTGACAACTGAAAACATGTTTGAGCCCTCCCTATGCTCGACAAGTTCCTCACTTGATTGCTCCTCCCTTGTAGAAGAGGAGACCCTACACCGCTTGAACTCATCAAGAAGTCATAGTAAATGTAGTGAACAATCAGATAGGCCTAAAGAATTGGCCAAGATCAATAAAAAGAGGGGTAAACCTGGTGAGAATTGCAGGCCTAGGCCGAGGGACAGACAATTGATCCAAGATCGTATCAAGGAGTTGCGGGACCTTGTACCCAACGGATCAAAGTGCAGTATTGATGCACTTTTGGAGCAAACAATCAAGCACATGATCTTTATGCAATGCATCACCAAGCACGCTGACAAGCTTGATAGATGCACCGACATGAAGTTGCTTGACAAGGAAACGAGTGTACAAGGATCCTCCAGTTACAAACAAGGCTCAAGCTGGGCAATGGAAGTTGGAAGTCACCTGAAAGTTTGTCCAATAAAAGTAGAAAACATTAACATGAACAGGCAAATGCTGGTAGAGATGTTGTGCGAGGACTGCAGCCATTTTCTTGATATCGCAGATGCCATCAAGAGCTTGGGCCTGATAATTTTGAAAGGCATAACAGAAGCTTATAAAGAGAAAACCTGGATATGTTTTGTGGTTGAGGGACAAAACAAGAGAAGCCTACATCGAGTGGAAATATTATGGTCGCTTGTGCAAATATTGCAATCAAAGATGGAAGAATCTTAAGTGGTATATATATAATATATACGGTTGTTGACAATTTGGAATGGCCGAATGAGAATTCAATTTCATCCTAGCTAGGAGCTGAAAGACAATGCAACCCCCCAGTCGATAAT

Network for GWHGAAZE009704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.7	bHLH-MYC_N	5	166	5.60E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.598
	SRR3591706	second leaf	7.505
	SRR3591707	mature leaf	2.852
	SRR3591708	Shoot apex	19.565
	SRR3591709	Stem	68.519
	SRR3591710	White floral bud	2.553
	SRR3591711	White flower	0.606
	SRR3591712	Green floral bud	6.688
	SRR3591713	Yellow flower	0.135
SRP173429	SRR8316895	Juvenile bud stage	9.448
	SRR8316896	Juvenile bud stage	13.024
	SRR8316897	Juvenile bud stage	4.764
	SRR8316894	Third green stage	7.497
	SRR8316900	Third green stage	16.514
	SRR8316901	Third green stage	11.262
	SRR8316898	Complete white stage	0.169
	SRR8316899	Complete white stage	26.066
	SRR8316903	Complete white stage	1.298
	SRR8316902	Silver flowering stage	0.041
	SRR8316904	Silver flowering stage	0.254
	SRR8316905	Silver flowering stage	0.121
	SRR8316906	Gold flowering stage	0.146
	SRR8316907	Gold flowering stage	0.069
	SRR8316908	Gold flowering stage	0.176
SRP132670	SRR6706286	Control	8.883
	SRR6706287	Light intensity 50%	10.206
	SRR6706288	Light intensity 20%	9.783
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.389
	CNS0095593	Slightly white alabastrum(diploid) 2	9.332
	CNS0095594	Slightly white alabastrum(diploid) 3	5.123
	CNS0095595	Whole white alabastrum(diploid) 2	6.802
	CNS0095596	Whole white alabastrum(diploid) 3	1.245
	CNS0095597	Whole white alabastrum(diploid) 4	4.094
	CNS0095598	Silvery flower (diploied) 1	3.864
	CNS0095599	Silvery flower (diploied) 2	2.365
	CNS0095600	Silvery flower (diploied) 3	0.952
	CNS0095601	Golden flower (diploid) 1	1.674
	CNS0095602	Golden flower (diploid) 2	0.742
	CNS0095603	Golden flower (diploid) 3	0.511
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.867
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.869
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.785
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.030
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.240
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.825
	CNS0095610	Silvery flower (tetraploid) 1	0.479
	CNS0095611	Silvery flower (tetraploid) 2	0.985
	CNS0095612	Silvery flower (tetraploid) 3	0.797
	CNS0095613	Golden flower (tetraploid) 1	0.348
	CNS0095614	Golden flower (tetraploid) 2	0.085
	CNS0095615	Golden flower (tetraploid) 3	0.095
CRA001975	CRR073297	Stem 1	5.149
	CRR073298	Stem 2	4.364
	CRR073299	Stem 3	2.472
	CRR073300	Leaf 1	6.817
	CRR073301	Leaf 2	8.227
	CRR073302	Leaf 3	2.382
	CRR073303	Juvenile bud 1	4.126
	CRR073304	Juvenile bud 2	0.159
	CRR073305	Juvenile bud 3	4.257
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.526
	CRR073316	Gold flowering 2	4.170
	CRR073317	Gold flowering 3	0.852
	CRR073318	Tawny withering 1	6.005
	CRR073319	Tawny withering 2	10.855
	CRR073320	Tawny withering 3	7.907