Detail information of GWHGAAZE009707


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002521022.13.69156E-93LOB domain-containing protein, putative [Ricinus communis]
Swissprottr|Q9SLB7|LBD16_ARATH3E-70LOB domain-containing protein 16
trEMBLtr|B9S4L6|B9S4L6_RICCO1E-93LOB domain-containing protein, putative {ECO:0000313|EMBL:EEF41439.1}
TAIR10AT2G42430.11E-47lateral organ boundaries-domain 16

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene115487052115488022-
GWHAAZE00000002mRNA115487052115488022-
GWHAAZE00000002exon115487741115488022-
GWHAAZE00000002exon115487052115487393-
GWHAAZE00000002CDS115487741115488022-
GWHAAZE00000002CDS115487052115487393-
Transcript Sequence

Network for GWHGAAZE009707

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB81062.60E-36
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.362
SRR3591706second leaf0.223
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.153
SRR3591709Stem5.152
SRR3591710White floral bud0.000
SRR3591711White flower0.506
SRR3591712Green floral bud0.185
SRR3591713Yellow flower0.168
SRP173429 SRR8316895Juvenile bud stage 0.139
SRR8316896Juvenile bud stage 0.068
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.099
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.536
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.953
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.173
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.052
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.331
SRR6706287Light intensity 50%0.429
SRR6706288Light intensity 20%0.194
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.487
CNS0095593Slightly white alabastrum(diploid) 20.108
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.469
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.113
CNS0095600Silvery flower (diploied) 30.165
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.100
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.249
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.117
CRA001975CRR073297Stem 10.259
CRR073298Stem 20.211
CRR073299Stem 30.090
CRR073300Leaf 10.495
CRR073301Leaf 20.027
CRR073302Leaf 30.275
CRR073303Juvenile bud 10.572
CRR073304Juvenile bud 20.214
CRR073305Juvenile bud 30.215
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.334
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.029
CRR073319Tawny withering 20.071
CRR073320Tawny withering 30.000