Detail information of GWHGAAZE009708


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652358.10PREDICTED: poly [ADP-ribose] polymerase 1 [Vitis vinifera]
Swissprottr|Q9ZP54|PARP1_ARATH0Poly [ADP-ribose] polymerase 1
trEMBLtr|D7U2X3|D7U2X3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI37089.3}
TAIR10AT2G31320.10poly(ADP-ribose) polymerase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene115493596115500728-
GWHAAZE00000002mRNA115493596115500728-
GWHAAZE00000002exon115493596115493643-
GWHAAZE00000002exon115493853115494035-
GWHAAZE00000002exon115494146115494283-
GWHAAZE00000002exon115494690115494797-
GWHAAZE00000002exon115494915115495082-
GWHAAZE00000002exon115495282115495442-
GWHAAZE00000002exon115495570115495646-
GWHAAZE00000002exon115495729115495838-
GWHAAZE00000002exon115495971115496208-
GWHAAZE00000002exon115496288115496542-
GWHAAZE00000002exon115496665115496728-
GWHAAZE00000002exon115496826115496886-
GWHAAZE00000002exon115496979115497134-
GWHAAZE00000002exon115497318115497510-
GWHAAZE00000002exon115497778115498075-
GWHAAZE00000002exon115498555115498741-
GWHAAZE00000002exon115499305115499494-
GWHAAZE00000002exon115499618115499667-
GWHAAZE00000002exon115500541115500728-
GWHAAZE00000002five_prime_UTR115500685115500728-
GWHAAZE00000002CDS115500541115500684-
GWHAAZE00000002CDS115499618115499667-
GWHAAZE00000002CDS115499305115499494-
GWHAAZE00000002CDS115498555115498741-
GWHAAZE00000002CDS115497778115498075-
GWHAAZE00000002CDS115497318115497510-
GWHAAZE00000002CDS115496979115497134-
GWHAAZE00000002CDS115496826115496886-
GWHAAZE00000002CDS115496665115496728-
GWHAAZE00000002CDS115496288115496542-
GWHAAZE00000002CDS115495971115496208-
GWHAAZE00000002CDS115495729115495838-
GWHAAZE00000002CDS115495570115495646-
GWHAAZE00000002CDS115495282115495442-
GWHAAZE00000002CDS115494915115495082-
GWHAAZE00000002CDS115494690115494797-
GWHAAZE00000002CDS115494146115494283-
GWHAAZE00000002CDS115493853115494035-
GWHAAZE00000002CDS115493596115493643-
Transcript Sequence

Network for GWHGAAZE009708

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00645.19zf-PARP11862.60E-20
PF00645.19zf-PARP1081784.70E-14
PF08063.13PADR12883368.00E-17
PF00533.27BRCT3894645.30E-08
PF05406.16WGR5185971.50E-18
PF02877.15PARP_reg6297381.80E-26
PF00644.21PARP8209387.40E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K24070PARP1 Base excision repair map03410
NF-kappa B signaling pathwaymap04064
Apoptosismap04210
Apoptosis - flymap04214
Necroptosismap04217
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0006471biological_processprotein ADP-ribosylation
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity
GO:0003677molecular_functionDNA binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.292
SRR3591706second leaf16.971
SRR3591707mature leaf13.023
SRR3591708Shoot apex37.047
SRR3591709Stem23.159
SRR3591710White floral bud23.056
SRR3591711White flower21.274
SRR3591712Green floral bud25.366
SRR3591713Yellow flower11.907
SRP173429 SRR8316895Juvenile bud stage 20.405
SRR8316896Juvenile bud stage 27.615
SRR8316897Juvenile bud stage 11.310
SRR8316894Third green stage 12.011
SRR8316900Third green stage 27.956
SRR8316901Third green stage 26.262
SRR8316898Complete white stage 4.511
SRR8316899Complete white stage 32.851
SRR8316903Complete white stage 12.701
SRR8316902Silver flowering stage4.349
SRR8316904Silver flowering stage7.181
SRR8316905Silver flowering stage3.080
SRR8316906Gold flowering stage 7.857
SRR8316907Gold flowering stage 8.868
SRR8316908Gold flowering stage 10.797
SRP132670SRR6706286Control24.128
SRR6706287Light intensity 50%26.003
SRR6706288Light intensity 20%27.480
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.429
CNS0095593Slightly white alabastrum(diploid) 214.824
CNS0095594Slightly white alabastrum(diploid) 310.714
CNS0095595Whole white alabastrum(diploid) 212.545
CNS0095596Whole white alabastrum(diploid) 39.739
CNS0095597Whole white alabastrum(diploid) 411.775
CNS0095598Silvery flower (diploied) 123.849
CNS0095599Silvery flower (diploied) 219.675
CNS0095600Silvery flower (diploied) 317.870
CNS0095601Golden flower (diploid) 118.634
CNS0095602Golden flower (diploid) 217.437
CNS0095603Golden flower (diploid) 318.634
CNS0095604Slightly white alabastrum(tetraploid) 121.016
CNS0095605Slightly white alabastrum(tetraploid) 212.871
CNS0095606Slightly white alabastrum(tetraploid) 343.333
CNS0095607Whole white alabastrum(tetraploid) 111.629
CNS0095608Whole white alabastrum(tetraploid) 26.514
CNS0095609Whole white alabastrum(tetraploid) 322.461
CNS0095610Silvery flower (tetraploid) 117.722
CNS0095611Silvery flower (tetraploid) 220.927
CNS0095612Silvery flower (tetraploid) 315.643
CNS0095613Golden flower (tetraploid) 15.193
CNS0095614Golden flower (tetraploid) 210.903
CNS0095615Golden flower (tetraploid) 34.752
CRA001975CRR073297Stem 132.370
CRR073298Stem 229.464
CRR073299Stem 323.644
CRR073300Leaf 134.449
CRR073301Leaf 229.359
CRR073302Leaf 323.179
CRR073303Juvenile bud 120.747
CRR073304Juvenile bud 211.735
CRR073305Juvenile bud 333.925
CRR073306Third green 13.571
CRR073307Third green 23.204
CRR073308Third green 34.431
CRR073309Second white 12.675
CRR073310Second white 24.391
CRR073311Second white 35.265
CRR073312Silver flowering 13.329
CRR073313Silver flowering 22.279
CRR073314Silver flowering 32.095
CRR073315Gold flowering 18.288
CRR073316Gold flowering 213.921
CRR073317Gold flowering 35.663
CRR073318Tawny withering 120.340
CRR073319Tawny withering 215.685
CRR073320Tawny withering 320.282