Gene detail

Detail information of GWHGAAZE009723

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006443911.1	9.892E-112	hypothetical protein CICLE_v10019396mg [Citrus clementina]
Swissprot	tr\|Q9M9Y5\|GAUT6_ARATH	1E-83	Probable galacturonosyltransferase 6
trEMBL	tr\|A0A059D2L2\|A0A059D2L2_EUCGR	2E-131	Uncharacterized protein {ECO:0000313\|EMBL:KCW84676.1}
TAIR10	AT1G06780.2	2E-73	galacturonosyltransferase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	115848471	115856691	+
GWHAAZE00000002	mRNA	115848471	115856691	+
GWHAAZE00000002	exon	115848471	115848548	+
GWHAAZE00000002	exon	115851972	115852013	+
GWHAAZE00000002	exon	115852114	115852261	+
GWHAAZE00000002	exon	115852360	115852433	+
GWHAAZE00000002	exon	115853844	115854076	+
GWHAAZE00000002	exon	115854205	115854562	+
GWHAAZE00000002	exon	115855637	115855879	+
GWHAAZE00000002	exon	115856416	115856691	+
GWHAAZE00000002	CDS	115848471	115848548	+
GWHAAZE00000002	CDS	115851972	115852013	+
GWHAAZE00000002	CDS	115852114	115852261	+
GWHAAZE00000002	CDS	115852360	115852433	+
GWHAAZE00000002	CDS	115853844	115854076	+
GWHAAZE00000002	CDS	115854205	115854562	+
GWHAAZE00000002	CDS	115855637	115855879	+
GWHAAZE00000002	CDS	115856416	115856691	+

Transcript Sequence
>GWHTAAZE009735 ATGTGGTTGGGTGGTTTTGCATTAGGTGGACAGAAATGGGGGAAAGTTTTGCATTTGGGGTTTGAATTTGAGCCGGAGAAATACAGGACAGAGGTTCTGAAACTTAATGCAATCGAACAGGAGGACGGTGAAGGCTTAAAAGAACCAACTCTAGTGGTGTACAAGGATAAAAATTTTGATTCGTTCATTAGACTTAGTTCAGATGAGAATATTACGTTTGAGCAATCTACAAATAAAGGAGGCAATGCTAATGTTTTGGAAAGGAATGGAACCAATCAGAATGCAGATGGAGATAGTCAGCAAAGTCGGCAGGAGAAAATACTGTCCGCATCCAGTGGAAAGGAAAAAGTCAAGCAAACAACAGTTAGACATGATCAGAAGGTACGCCCCCCTTCAAGGAGATTAACAAATGAAAAGTTAAAAGAGATGAAAGATCAGGTGATTAGGGCCAAAGCATACTTGAATTTTGCACAACCAAATAGCAACTCTCATTTGGTAAAGGAGTTGAAACTACGAATTAAAGAAATGGAGCGAACAATGGGTGATTCAACCAAGGATTCTGATCTGTCTAAGAGTGCTCTCAAGAGGATGAAATCCATGGAGGCCACCTTGTTAAAAGCCAATCGCGTATATGGGGACTGCTCTGCCATGGGTAAAAAACTCCGTGCTATGACTTACAATGCTGAAGAACAGGTCCGGGCACAGAAGAATCAAGCAAATTATCTTGTTCAGCTTGCTGGAAGGACTACCCAGAAAGGCCTTCATTGCCTCTCCATGCGGCTGACTTCTGAATATTTTGCCCTGAAACCAGAGGAGCGGGAGATCCCTAGCCAACAGGAACTTTTTGACCCAAAGCTCCATCATTTTGCTGTCTTCTCTGACAATGTTCTGGCTTGTGCAGTGGTTGTGAGTTCAACCATTTCCACCGCTAGGAGGGATCTAACAAGACTTTGGAGGGTCATCATGAAGGGAAAGGTTAATGGAGCAGTGGAGACTTGTCAAAAAGACGACCCTTCATACCGTAAGATGGATATGCTTATCAACTTCTCAGATCCATTCGTGGCTGGGAGGTTTGATATTAAGTCATGTACGTGGGCGTTTGGGATGAATGTTTTTGATTTGCAAGAATGGAGGAGACGGAATTTAACTGGAGTCTACCACGAATACCTTCAATTGGGAATCAAGCGGCCATTATGGAAAGCTGGCAGCCTACCCTTAGGGTGGGTCACCTTCTACAACCAGACTCTGACTTTGGACAGGCGATGGCATCTCCTTGGGTTGGGTCGACATGGCAGCATTAGGCAGGCCGACATCGAGCAGGCGGCAGTGATACACTATGACGGAGTGATGAAACCCTGGCTGGATATCAGTCTTGAGAATTACAAGCAGTACTGGAGGAAACACATCAACTATGACCACCCTTACTTGCGAGAATGCAATATTCATCAATAG

Network for GWHGAAZE009723

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	312	456	1.90E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13648	GAUT	Metabolic pathways	map01100
K13648	GAUT	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.734
	SRR3591706	second leaf	9.844
	SRR3591707	mature leaf	9.693
	SRR3591708	Shoot apex	13.622
	SRR3591709	Stem	28.022
	SRR3591710	White floral bud	22.689
	SRR3591711	White flower	27.672
	SRR3591712	Green floral bud	22.178
	SRR3591713	Yellow flower	20.431
SRP173429	SRR8316895	Juvenile bud stage	27.565
	SRR8316896	Juvenile bud stage	47.728
	SRR8316897	Juvenile bud stage	23.472
	SRR8316894	Third green stage	9.863
	SRR8316900	Third green stage	24.727
	SRR8316901	Third green stage	32.505
	SRR8316898	Complete white stage	11.262
	SRR8316899	Complete white stage	64.859
	SRR8316903	Complete white stage	17.837
	SRR8316902	Silver flowering stage	10.444
	SRR8316904	Silver flowering stage	12.753
	SRR8316905	Silver flowering stage	7.342
	SRR8316906	Gold flowering stage	17.753
	SRR8316907	Gold flowering stage	22.256
	SRR8316908	Gold flowering stage	20.909
SRP132670	SRR6706286	Control	16.022
	SRR6706287	Light intensity 50%	16.315
	SRR6706288	Light intensity 20%	16.300
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.484
	CNS0095593	Slightly white alabastrum(diploid) 2	35.811
	CNS0095594	Slightly white alabastrum(diploid) 3	39.496
	CNS0095595	Whole white alabastrum(diploid) 2	29.108
	CNS0095596	Whole white alabastrum(diploid) 3	23.684
	CNS0095597	Whole white alabastrum(diploid) 4	27.353
	CNS0095598	Silvery flower (diploied) 1	25.463
	CNS0095599	Silvery flower (diploied) 2	28.632
	CNS0095600	Silvery flower (diploied) 3	25.354
	CNS0095601	Golden flower (diploid) 1	26.451
	CNS0095602	Golden flower (diploid) 2	30.156
	CNS0095603	Golden flower (diploid) 3	28.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.195
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.431
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.865
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.676
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.732
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.406
	CNS0095610	Silvery flower (tetraploid) 1	17.347
	CNS0095611	Silvery flower (tetraploid) 2	15.862
	CNS0095612	Silvery flower (tetraploid) 3	17.115
	CNS0095613	Golden flower (tetraploid) 1	12.712
	CNS0095614	Golden flower (tetraploid) 2	17.320
	CNS0095615	Golden flower (tetraploid) 3	18.496
CRA001975	CRR073297	Stem 1	20.719
	CRR073298	Stem 2	17.682
	CRR073299	Stem 3	16.272
	CRR073300	Leaf 1	24.262
	CRR073301	Leaf 2	27.313
	CRR073302	Leaf 3	14.231
	CRR073303	Juvenile bud 1	22.559
	CRR073304	Juvenile bud 2	23.181
	CRR073305	Juvenile bud 3	25.506
	CRR073306	Third green 1	11.687
	CRR073307	Third green 2	12.931
	CRR073308	Third green 3	12.125
	CRR073309	Second white 1	10.681
	CRR073310	Second white 2	11.509
	CRR073311	Second white 3	11.885
	CRR073312	Silver flowering 1	14.648
	CRR073313	Silver flowering 2	19.781
	CRR073314	Silver flowering 3	17.805
	CRR073315	Gold flowering 1	7.611
	CRR073316	Gold flowering 2	13.361
	CRR073317	Gold flowering 3	5.146
	CRR073318	Tawny withering 1	31.619
	CRR073319	Tawny withering 2	33.559
	CRR073320	Tawny withering 3	36.740