Gene detail

Detail information of GWHGAAZE009725

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008235326.1	0	PREDICTED: F-box/LRR-repeat protein 17 [Prunus mume]
Swissprot	tr\|Q8W104\|FBL17_ARATH	0	F-box/LRR-repeat protein 17
trEMBL	tr\|A0A068U605\|A0A068U605_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03692.1}
TAIR10	AT3G54650.1	6E-161	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	115934097	115938712	+
GWHAAZE00000002	mRNA	115934097	115938712	+
GWHAAZE00000002	exon	115934097	115934190	+
GWHAAZE00000002	exon	115934268	115934661	+
GWHAAZE00000002	exon	115935070	115935171	+
GWHAAZE00000002	exon	115935767	115935911	+
GWHAAZE00000002	exon	115936041	115936225	+
GWHAAZE00000002	exon	115936343	115936447	+
GWHAAZE00000002	exon	115936786	115936883	+
GWHAAZE00000002	exon	115936980	115937197	+
GWHAAZE00000002	exon	115937305	115937371	+
GWHAAZE00000002	exon	115937484	115937569	+
GWHAAZE00000002	exon	115938332	115938430	+
GWHAAZE00000002	exon	115938644	115938712	+
GWHAAZE00000002	CDS	115934097	115934190	+
GWHAAZE00000002	CDS	115934268	115934661	+
GWHAAZE00000002	CDS	115935070	115935171	+
GWHAAZE00000002	CDS	115935767	115935911	+
GWHAAZE00000002	CDS	115936041	115936225	+
GWHAAZE00000002	CDS	115936343	115936447	+
GWHAAZE00000002	CDS	115936786	115936883	+
GWHAAZE00000002	CDS	115936980	115937197	+
GWHAAZE00000002	CDS	115937305	115937371	+
GWHAAZE00000002	CDS	115937484	115937569	+
GWHAAZE00000002	CDS	115938332	115938430	+
GWHAAZE00000002	CDS	115938644	115938712	+

Transcript Sequence
>GWHTAAZE009737 ATGCACAAACACCTCCCCCACCCTGCCACTCCCGGCGCTGGCACCGCACTCATCGCCGCCGATGCCTTCCCAAAGAAGAAAGGCAAAAGCCGCGACTCCACCTCCTCCGCCACCACCGTCGATCCTCCGCCACGTCAGCCTTATTCGCACCTCAGGCGAGCACTCTCCTTCGACGACATCGATGTGCCGGATTCGGCGGAATCTGATGATGATAATGAGTTTTTTTCGCCGGAAATGGTGTCGGATCTGTCTACCGGTAACTCCAAGTTGCCGTCGAGCTGCTTGTGGGAGGTGCTGAGGAGGTTGCCGCCGACTGCACTGTTATCGGCGGCGATGGTGTGTAAAGGTTGGCGGGACACGACGAGAAGACTGTGGAAGGCGGCGGAAGAGCTGAGACTTAGGGTTCCGGCGAAAGCTCAAGGTAGATTCGCCGGATCGGTGTTGCAGAAGTGTCCCGGACTCGTTAGGCTATCCCTTAGAATGGAAAGCGATGTGGATGCAACGATGCTGGCCTGTATTGCATTCTCGTGTCCCAATCTGCAATCTTTGGAGATATTTTCATCTGCTACCTCAGTCAATCGGATTACTGGGGATGAATTGGGTCGCTTTGTTGCTGATAAACGTTGCCTTGCAAGTCTCAAAATGGAAGGGTGTTCCAATCTCGGAGGTTTTATTCTCTGTTCATCCAGTCTCTCTACGCTTTGGCTTTCAGATCTTCATTCACTCTCCAAGATGGTTGTCAATTGCCCCAGTTTGAAGGAGATTTCCCTTGTTTTTTCTCGCCAAGAGAAAGATAGTACTGATCTTACTGCAATGGTTGACGGCCTTGGAAGGAGTTGCCCAAGATTACAGAACATACACATTGCCTCAGTTCGGCTTTCACATGCTGTTGTCCTCTCTCTCTCAGCTGCAAATTTGAGGGGTTTACGAATGCTTTCTCTTGTACTTGGATCTGAAATTACTGATGCATCTGTTGCAGCAATTGCTTCTAGCTATTCAAACCTAGATTTGCTTGATCTGAGTGGGTCTAGTATCAGTGACAGTGGTATTGGAATGATATGCAATGTATTCCCCGATACATTATCAAGACTTCTCCTTGCGCTCTGCCCTAATATTACTTCAAGTGGCATCCAATTTGCCACAGCGCAATTGCCTCTTCTGGAACTAATGGACTGTGGAATGACAATATGTGACACTGACGAACAAAATTCAACAACTGAAGAGAATAGTGATTATGACTTACATAGAACACCAAACAAGCTACATCTGATGTACCAGAAGCTCATTATCAAACATTGTCGGTTGAAGAAATTAAGCTTGTGGGGTTGTTCTGGCTTAGATGGTTTATATTTGAACTGCCCAGAACTCAATGACCTGAATTTGAACTCGTGTAGAAATTTAAATCCTGAGAGATTGATACTTCAATGTCCCAATTTGGATAATGTGCATGCATCTGGTTGCCAGGAGATGCTGATTGAAACCATTAAAAACCAGGTCCATAGTGATTCTGGTGCTGTAGAGAACCCTTTTCCTTGCAAACGTTTAGCTGATGGCTCCAAGAGGGTCCGCGTCCCGCATTTTCTCAGCCAACAGACATCTGATGATGACAATAAGGGTGGGAGAAGTGGGAAGCGGCGGCTGTGTACTTTGCTTGTGGACTAA

Network for GWHGAAZE009725

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	88	123	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.760
	SRR3591706	second leaf	2.367
	SRR3591707	mature leaf	0.092
	SRR3591708	Shoot apex	17.745
	SRR3591709	Stem	2.991
	SRR3591710	White floral bud	0.408
	SRR3591711	White flower	0.222
	SRR3591712	Green floral bud	1.943
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.085
	SRR8316896	Juvenile bud stage	1.755
	SRR8316897	Juvenile bud stage	1.415
	SRR8316894	Third green stage	1.034
	SRR8316900	Third green stage	1.137
	SRR8316901	Third green stage	0.930
	SRR8316898	Complete white stage	0.062
	SRR8316899	Complete white stage	0.493
	SRR8316903	Complete white stage	0.569
	SRR8316902	Silver flowering stage	0.032
	SRR8316904	Silver flowering stage	0.197
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.097
	SRR8316907	Gold flowering stage	0.080
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.566
	SRR6706287	Light intensity 50%	0.954
	SRR6706288	Light intensity 20%	1.235
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.395
	CNS0095593	Slightly white alabastrum(diploid) 2	3.193
	CNS0095594	Slightly white alabastrum(diploid) 3	0.946
	CNS0095595	Whole white alabastrum(diploid) 2	1.049
	CNS0095596	Whole white alabastrum(diploid) 3	0.440
	CNS0095597	Whole white alabastrum(diploid) 4	0.857
	CNS0095598	Silvery flower (diploied) 1	2.063
	CNS0095599	Silvery flower (diploied) 2	1.718
	CNS0095600	Silvery flower (diploied) 3	0.524
	CNS0095601	Golden flower (diploid) 1	0.935
	CNS0095602	Golden flower (diploid) 2	0.360
	CNS0095603	Golden flower (diploid) 3	0.363
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.481
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.521
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.290
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.043
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.630
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.158
	CNS0095610	Silvery flower (tetraploid) 1	0.061
	CNS0095611	Silvery flower (tetraploid) 2	0.219
	CNS0095612	Silvery flower (tetraploid) 3	0.482
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	5.134
	CRR073298	Stem 2	2.784
	CRR073299	Stem 3	6.474
	CRR073300	Leaf 1	0.703
	CRR073301	Leaf 2	1.095
	CRR073302	Leaf 3	1.291
	CRR073303	Juvenile bud 1	2.184
	CRR073304	Juvenile bud 2	1.498
	CRR073305	Juvenile bud 3	2.716
	CRR073306	Third green 1	0.275
	CRR073307	Third green 2	0.940
	CRR073308	Third green 3	0.843
	CRR073309	Second white 1	0.165
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.109
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.612
	CRR073316	Gold flowering 2	0.983
	CRR073317	Gold flowering 3	0.074
	CRR073318	Tawny withering 1	4.471
	CRR073319	Tawny withering 2	5.431
	CRR073320	Tawny withering 3	5.071