Detail information of GWHGAAZE009727


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABR25699.11.28275E-13osiaa30-auxin-responsive aux/iaa gene family member, expressed [Oryza sativa Indica Group]
Swissprottr|P0C132|IAA30_ORYSJ3E-15Auxin-responsive protein IAA30
trEMBLtr|M0YUB0|M0YUB0_HORVD5E-14Auxin-responsive protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT3G04730.11E-12indoleacetic acid-induced protein 16

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene115964486115966922-
GWHAAZE00000002mRNA115964486115966922-
GWHAAZE00000002exon115966657115966922-
GWHAAZE00000002exon115964621115964682-
GWHAAZE00000002exon115964486115964523-
GWHAAZE00000002CDS115966657115966922-
GWHAAZE00000002CDS115964621115964682-
GWHAAZE00000002CDS115964486115964523-
Transcript Sequence

Network for GWHGAAZE009727

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0051


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02309.17AUX_IAA871122.40E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA

KEGG pathway

KO Enzyme pathway mapID
K14484IAA Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf369.573
SRR3591706second leaf166.183
SRR3591707mature leaf37.135
SRR3591708Shoot apex176.734
SRR3591709Stem43.810
SRR3591710White floral bud411.212
SRR3591711White flower269.602
SRR3591712Green floral bud609.195
SRR3591713Yellow flower56.166
SRP173429 SRR8316895Juvenile bud stage 189.674
SRR8316896Juvenile bud stage 300.280
SRR8316897Juvenile bud stage 100.762
SRR8316894Third green stage 150.241
SRR8316900Third green stage 543.789
SRR8316901Third green stage 674.904
SRR8316898Complete white stage 217.005
SRR8316899Complete white stage 1108.978
SRR8316903Complete white stage 299.988
SRR8316902Silver flowering stage131.809
SRR8316904Silver flowering stage180.819
SRR8316905Silver flowering stage126.769
SRR8316906Gold flowering stage 270.962
SRR8316907Gold flowering stage 118.339
SRR8316908Gold flowering stage 142.379
SRP132670SRR6706286Control844.721
SRR6706287Light intensity 50%913.536
SRR6706288Light intensity 20%1013.221
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1280.470
CNS0095593Slightly white alabastrum(diploid) 2318.579
CNS0095594Slightly white alabastrum(diploid) 3202.911
CNS0095595Whole white alabastrum(diploid) 2255.338
CNS0095596Whole white alabastrum(diploid) 3299.003
CNS0095597Whole white alabastrum(diploid) 4319.183
CNS0095598Silvery flower (diploied) 1120.673
CNS0095599Silvery flower (diploied) 2171.887
CNS0095600Silvery flower (diploied) 3408.562
CNS0095601Golden flower (diploid) 190.411
CNS0095602Golden flower (diploid) 2116.889
CNS0095603Golden flower (diploid) 3124.783
CNS0095604Slightly white alabastrum(tetraploid) 1220.152
CNS0095605Slightly white alabastrum(tetraploid) 2167.549
CNS0095606Slightly white alabastrum(tetraploid) 3515.609
CNS0095607Whole white alabastrum(tetraploid) 1128.529
CNS0095608Whole white alabastrum(tetraploid) 2138.869
CNS0095609Whole white alabastrum(tetraploid) 3542.383
CNS0095610Silvery flower (tetraploid) 1189.669
CNS0095611Silvery flower (tetraploid) 2159.330
CNS0095612Silvery flower (tetraploid) 3128.882
CNS0095613Golden flower (tetraploid) 158.399
CNS0095614Golden flower (tetraploid) 296.150
CNS0095615Golden flower (tetraploid) 3109.612
CRA001975CRR073297Stem 1307.614
CRR073298Stem 2339.448
CRR073299Stem 3212.628
CRR073300Leaf 1652.439
CRR073301Leaf 2568.960
CRR073302Leaf 3632.135
CRR073303Juvenile bud 1744.171
CRR073304Juvenile bud 2669.041
CRR073305Juvenile bud 3789.218
CRR073306Third green 1468.346
CRR073307Third green 2437.686
CRR073308Third green 3409.029
CRR073309Second white 1114.883
CRR073310Second white 285.762
CRR073311Second white 351.452
CRR073312Silver flowering 163.192
CRR073313Silver flowering 249.357
CRR073314Silver flowering 355.487
CRR073315Gold flowering 176.571
CRR073316Gold flowering 250.697
CRR073317Gold flowering 351.854
CRR073318Tawny withering 111.191
CRR073319Tawny withering 212.418
CRR073320Tawny withering 37.990