Gene detail

Detail information of GWHGAAZE009731

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP21376.1	5.0911E-155	hypothetical protein JCGZ_21847 [Jatropha curcas]
Swissprot	tr\|O22765\|TRPA1_ARATH	1E-148	Tryptophan synthase alpha chain
trEMBL	tr\|A0A067JC03\|A0A067JC03_JATCU	2E-155	Uncharacterized protein {ECO:0000313\|EMBL:KDP21376.1}
TAIR10	AT4G02610.1	2E-112	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116062400	116066441	-
GWHAAZE00000002	mRNA	116062400	116066441	-
GWHAAZE00000002	exon	116062400	116062534	-
GWHAAZE00000002	exon	116062885	116062944	-
GWHAAZE00000002	exon	116063281	116063358	-
GWHAAZE00000002	exon	116063452	116063529	-
GWHAAZE00000002	exon	116064231	116064307	-
GWHAAZE00000002	exon	116064899	116065007	-
GWHAAZE00000002	exon	116065755	116065820	-
GWHAAZE00000002	exon	116065899	116066045	-
GWHAAZE00000002	exon	116066427	116066441	-
GWHAAZE00000002	CDS	116066427	116066441	-
GWHAAZE00000002	CDS	116065899	116066045	-
GWHAAZE00000002	CDS	116065755	116065820	-
GWHAAZE00000002	CDS	116064899	116065007	-
GWHAAZE00000002	CDS	116064231	116064307	-
GWHAAZE00000002	CDS	116063452	116063529	-
GWHAAZE00000002	CDS	116063281	116063358	-
GWHAAZE00000002	CDS	116062885	116062944	-
GWHAAZE00000002	CDS	116062400	116062534	-

Transcript Sequence
>GWHTAAZE009743 ATGTTTGTTTGGTATGTGGCATTCATCCCATACATCACAGCTGGTGATCCCGACCTTGCAACAACAGCAGAAGCACTGAAGGTGCTGGACTCTTGTGGTTCTGACATCATCGAACTGGGTGTACCGTATTCTGATCCGTTGGCTGATGGTCCTGTTATCCAGGCTGCCGCGACACGTTCTCTGGCAAGAGGAACCAATTACGATTCAATCATCTCAATGTTGAAGGAGGTGGTACCGCAATTATCTTGTCCAGTTGCATTATTTTCATATTATAATCCAATACTTAAGCGTGGGGTAAAGAAGTTCATGATTACTGTGAAAGATGCTGGGATACATGGACTTGTGGTCCCAGATGTCCCTCTAGAGGAAACTGAGATATTAAGGAAGGAAGCTGTCAATAATAAGATTGAATTGGTACTGCTCACGACACCCACTACTCCAACAGCTCGTATGAAAGCCATTGTTGAAGCTTCAGAAGGATTTGTTTACCTTGTGAGCTCTGTTGGGGTTACAGGTGCTCGTGCAGCTGTAAGTGAAAAGGTTCAAACTCTGCTGCAGGATATAAAAGAGGCATCAAGCAAACCGGTAGCTGTTGGCTTTGGCTTTTCAAAACCTGAGCATGTGAAGCAGGTGGCTGGATGGGGTGCAGATGGTGTAATAGTGGGTAGCGCAATTGTGAAATTGCTTGGTGAAGCAAAATCACCTGAAGAGGGTTTGAAAGAGTTAGAGATCTTCACCAAGTCCCTAAAAGATGCATTGTCTTGA

Network for GWHGAAZE009731

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00290.21	Trp_syntA	7	252	1.90E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01695	trpA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Glycine, serine and threonine metabolism	map00260
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0006568	biological_process	tryptophan metabolic process
GO:0004834	molecular_function	tryptophan synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.564
	SRR3591706	second leaf	9.577
	SRR3591707	mature leaf	6.821
	SRR3591708	Shoot apex	24.893
	SRR3591709	Stem	9.095
	SRR3591710	White floral bud	4.352
	SRR3591711	White flower	4.882
	SRR3591712	Green floral bud	8.913
	SRR3591713	Yellow flower	2.972
SRP173429	SRR8316895	Juvenile bud stage	14.593
	SRR8316896	Juvenile bud stage	20.077
	SRR8316897	Juvenile bud stage	3.243
	SRR8316894	Third green stage	9.666
	SRR8316900	Third green stage	18.843
	SRR8316901	Third green stage	20.014
	SRR8316898	Complete white stage	1.962
	SRR8316899	Complete white stage	14.627
	SRR8316903	Complete white stage	3.308
	SRR8316902	Silver flowering stage	0.376
	SRR8316904	Silver flowering stage	0.302
	SRR8316905	Silver flowering stage	0.187
	SRR8316906	Gold flowering stage	0.494
	SRR8316907	Gold flowering stage	1.272
	SRR8316908	Gold flowering stage	0.312
SRP132670	SRR6706286	Control	16.138
	SRR6706287	Light intensity 50%	17.629
	SRR6706288	Light intensity 20%	18.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.759
	CNS0095593	Slightly white alabastrum(diploid) 2	12.948
	CNS0095594	Slightly white alabastrum(diploid) 3	11.795
	CNS0095595	Whole white alabastrum(diploid) 2	7.675
	CNS0095596	Whole white alabastrum(diploid) 3	7.836
	CNS0095597	Whole white alabastrum(diploid) 4	7.178
	CNS0095598	Silvery flower (diploied) 1	8.178
	CNS0095599	Silvery flower (diploied) 2	9.561
	CNS0095600	Silvery flower (diploied) 3	1.071
	CNS0095601	Golden flower (diploid) 1	6.778
	CNS0095602	Golden flower (diploid) 2	1.096
	CNS0095603	Golden flower (diploid) 3	1.380
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.770
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.955
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.328
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.072
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.370
	CNS0095610	Silvery flower (tetraploid) 1	0.790
	CNS0095611	Silvery flower (tetraploid) 2	1.027
	CNS0095612	Silvery flower (tetraploid) 3	0.750
	CNS0095613	Golden flower (tetraploid) 1	0.233
	CNS0095614	Golden flower (tetraploid) 2	0.213
	CNS0095615	Golden flower (tetraploid) 3	0.085
CRA001975	CRR073297	Stem 1	17.623
	CRR073298	Stem 2	20.874
	CRR073299	Stem 3	6.005
	CRR073300	Leaf 1	19.727
	CRR073301	Leaf 2	23.281
	CRR073302	Leaf 3	12.185
	CRR073303	Juvenile bud 1	9.721
	CRR073304	Juvenile bud 2	5.555
	CRR073305	Juvenile bud 3	7.224
	CRR073306	Third green 1	0.738
	CRR073307	Third green 2	0.056
	CRR073308	Third green 3	0.483
	CRR073309	Second white 1	0.352
	CRR073310	Second white 2	0.157
	CRR073311	Second white 3	0.036
	CRR073312	Silver flowering 1	0.162
	CRR073313	Silver flowering 2	0.445
	CRR073314	Silver flowering 3	0.095
	CRR073315	Gold flowering 1	5.354
	CRR073316	Gold flowering 2	7.635
	CRR073317	Gold flowering 3	3.450
	CRR073318	Tawny withering 1	7.104
	CRR073319	Tawny withering 2	6.777
	CRR073320	Tawny withering 3	5.695