Gene detail

Detail information of GWHGAAZE009742

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008368689.1	4.84778E-82	PREDICTED: calmodulin-like protein 11 [Malus domestica]
Swissprot	tr\|P04464\|CALM_WHEAT	2E-71	Calmodulin
trEMBL	tr\|M5VKP7\|M5VKP7_PRUPE	3E-80	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01719.1}
TAIR10	AT5G37780.1	1E-55	calmodulin 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116307399	116308420	+
GWHAAZE00000002	mRNA	116307399	116308420	+
GWHAAZE00000002	exon	116307399	116307474	+
GWHAAZE00000002	exon	116307762	116307919	+
GWHAAZE00000002	exon	116308084	116308161	+
GWHAAZE00000002	exon	116308286	116308420	+
GWHAAZE00000002	CDS	116307399	116307474	+
GWHAAZE00000002	CDS	116307762	116307919	+
GWHAAZE00000002	CDS	116308084	116308161	+
GWHAAZE00000002	CDS	116308286	116308420	+

Transcript Sequence
>GWHTAAZE009754 ATGGCGGATCAACTTACAGAAGAACAGATTGCGGAGTTCCGCGAGGCCTTCTGTTTAATTGACAAGGACTCCGATGGCTATGTTACGATGGAAGATTTGTCTGCAGTAATACAATCTTTGAATGAAAATCCAACAAAAGAGGAGGTGAAAGACATGATAAATGAAGTTGATACCGATGGAAATGGGACAATTGATTTCGAGGAGTTTTTGAATATCATGGCAAGGAAAATGAAGGATAATGTATCTGATGAACTAAAGGAAGCTTTCAAAGTATTTGACCGGGACCAAGATGGTTACATATCAGCTACTGAGCTGAGCCATGTGATGATAAATTTGGGAGAGAGATTAACGGATGAAGAAGTGGAACAGATGATAAGAGAAGCAGATTTAGATGGAGATGGTCTGGTCAGCTACGAGGAATTCGCCAGAGTTATGATCATCACTTGA

Network for GWHGAAZE009742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0065

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	13	73	1.10E-16
PF13499.7	EF-hand_7	83	145	5.20E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02183	CALM	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway - plant	map04016
		Apelin signaling pathway	map04371
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		GnRH signaling pathway	map04912
		Estrogen signaling pathway	map04915
		Oxytocin signaling pathway	map04921
		Melanogenesis	map04916
		Renin secretion	map04924
		Aldosterone synthesis and secretion	map04925
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Salivary secretion	map04970
		Gastric acid secretion	map04971
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Neurotrophin signaling pathway	map04722
		Phototransduction	map04744
		Phototransduction - fly	map04745
		Olfactory transduction	map04740
		Inflammatory mediator regulation of TRP channels	map04750
		Circadian entrainment	map04713
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.409
	SRR3591706	second leaf	0.253
	SRR3591707	mature leaf	18.667
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	2.715
	SRR3591710	White floral bud	2.842
	SRR3591711	White flower	3.132
	SRR3591712	Green floral bud	4.049
	SRR3591713	Yellow flower	2.309
SRP173429	SRR8316895	Juvenile bud stage	1.481
	SRR8316896	Juvenile bud stage	4.411
	SRR8316897	Juvenile bud stage	1.432
	SRR8316894	Third green stage	0.382
	SRR8316900	Third green stage	0.736
	SRR8316901	Third green stage	0.817
	SRR8316898	Complete white stage	2.630
	SRR8316899	Complete white stage	4.957
	SRR8316903	Complete white stage	0.625
	SRR8316902	Silver flowering stage	0.829
	SRR8316904	Silver flowering stage	2.945
	SRR8316905	Silver flowering stage	0.809
	SRR8316906	Gold flowering stage	9.571
	SRR8316907	Gold flowering stage	2.618
	SRR8316908	Gold flowering stage	13.562
SRP132670	SRR6706286	Control	5.997
	SRR6706287	Light intensity 50%	4.168
	SRR6706288	Light intensity 20%	2.150
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.749
	CNS0095593	Slightly white alabastrum(diploid) 2	3.536
	CNS0095594	Slightly white alabastrum(diploid) 3	3.799
	CNS0095595	Whole white alabastrum(diploid) 2	2.016
	CNS0095596	Whole white alabastrum(diploid) 3	0.288
	CNS0095597	Whole white alabastrum(diploid) 4	2.751
	CNS0095598	Silvery flower (diploied) 1	11.110
	CNS0095599	Silvery flower (diploied) 2	2.107
	CNS0095600	Silvery flower (diploied) 3	0.482
	CNS0095601	Golden flower (diploid) 1	3.004
	CNS0095602	Golden flower (diploid) 2	3.255
	CNS0095603	Golden flower (diploid) 3	2.456
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.345
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.707
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.641
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.273
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.153
	CNS0095610	Silvery flower (tetraploid) 1	0.982
	CNS0095611	Silvery flower (tetraploid) 2	0.427
	CNS0095612	Silvery flower (tetraploid) 3	0.739
	CNS0095613	Golden flower (tetraploid) 1	0.057
	CNS0095614	Golden flower (tetraploid) 2	1.770
	CNS0095615	Golden flower (tetraploid) 3	0.141
CRA001975	CRR073297	Stem 1	0.043
	CRR073298	Stem 2	0.405
	CRR073299	Stem 3	0.092
	CRR073300	Leaf 1	0.109
	CRR073301	Leaf 2	0.178
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.053
	CRR073307	Third green 2	0.089
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.270
	CRR073310	Second white 2	0.157
	CRR073311	Second white 3	0.119
	CRR073312	Silver flowering 1	0.379
	CRR073313	Silver flowering 2	0.109
	CRR073314	Silver flowering 3	0.529
	CRR073315	Gold flowering 1	2.072
	CRR073316	Gold flowering 2	6.038
	CRR073317	Gold flowering 3	4.413
	CRR073318	Tawny withering 1	14.017
	CRR073319	Tawny withering 2	25.027
	CRR073320	Tawny withering 3	2.373