Detail information of GWHGAAZE009746


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03677.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068U5Z1|A0A068U5Z1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03677.1}
TAIR10AT1G03060.10Beige/BEACH domain ;WD domain, G-beta repeat protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene116414715116442411-
GWHAAZE00000002mRNA116414715116442411-
GWHAAZE00000002exon116442299116442411-
GWHAAZE00000002exon116441699116441768-
GWHAAZE00000002exon116441512116441597-
GWHAAZE00000002exon116441158116441293-
GWHAAZE00000002exon116441006116441062-
GWHAAZE00000002exon116440484116440660-
GWHAAZE00000002exon116437841116438032-
GWHAAZE00000002exon116437610116437675-
GWHAAZE00000002exon116429034116429148-
GWHAAZE00000002exon116427614116428794-
GWHAAZE00000002exon116425875116426577-
GWHAAZE00000002exon116425693116425795-
GWHAAZE00000002exon116424469116425580-
GWHAAZE00000002exon116422430116424089-
GWHAAZE00000002exon116418852116421881-
GWHAAZE00000002exon116418407116418715-
GWHAAZE00000002exon116416868116417174-
GWHAAZE00000002exon116416594116416740-
GWHAAZE00000002exon116414715116415902-
GWHAAZE00000002CDS116442299116442411-
GWHAAZE00000002CDS116441699116441768-
GWHAAZE00000002CDS116441512116441597-
GWHAAZE00000002CDS116441158116441293-
GWHAAZE00000002CDS116441006116441062-
GWHAAZE00000002CDS116440484116440660-
GWHAAZE00000002CDS116437841116438032-
GWHAAZE00000002CDS116437610116437675-
GWHAAZE00000002CDS116429034116429148-
GWHAAZE00000002CDS116427614116428794-
GWHAAZE00000002CDS116425875116426577-
GWHAAZE00000002CDS116425693116425795-
GWHAAZE00000002CDS116424469116425580-
GWHAAZE00000002CDS116422430116424089-
GWHAAZE00000002CDS116418852116421881-
GWHAAZE00000002CDS116418407116418715-
GWHAAZE00000002CDS116416868116417174-
GWHAAZE00000002CDS116416594116416740-
GWHAAZE00000002CDS116414715116415902-
Transcript Sequence

Network for GWHGAAZE009746

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14844.7PH_BEACH287229254.70E-09
PF02138.19Beach296332422.30E-116
PF00400.33WD40332633560.00037
PF00400.33WD40337534070.0031
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.364
SRR3591706second leaf3.713
SRR3591707mature leaf3.564
SRR3591708Shoot apex6.920
SRR3591709Stem9.868
SRR3591710White floral bud8.540
SRR3591711White flower11.020
SRR3591712Green floral bud11.431
SRR3591713Yellow flower9.435
SRP173429 SRR8316895Juvenile bud stage 6.402
SRR8316896Juvenile bud stage 8.156
SRR8316897Juvenile bud stage 4.213
SRR8316894Third green stage 4.829
SRR8316900Third green stage 10.069
SRR8316901Third green stage 10.449
SRR8316898Complete white stage 1.510
SRR8316899Complete white stage 5.347
SRR8316903Complete white stage 5.677
SRR8316902Silver flowering stage3.133
SRR8316904Silver flowering stage5.840
SRR8316905Silver flowering stage2.297
SRR8316906Gold flowering stage 12.296
SRR8316907Gold flowering stage 8.990
SRR8316908Gold flowering stage 9.192
SRP132670SRR6706286Control7.953
SRR6706287Light intensity 50%8.871
SRR6706288Light intensity 20%8.986
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.456
CNS0095593Slightly white alabastrum(diploid) 24.091
CNS0095594Slightly white alabastrum(diploid) 34.231
CNS0095595Whole white alabastrum(diploid) 26.673
CNS0095596Whole white alabastrum(diploid) 37.130
CNS0095597Whole white alabastrum(diploid) 48.170
CNS0095598Silvery flower (diploied) 13.655
CNS0095599Silvery flower (diploied) 22.892
CNS0095600Silvery flower (diploied) 310.023
CNS0095601Golden flower (diploid) 13.909
CNS0095602Golden flower (diploid) 210.946
CNS0095603Golden flower (diploid) 311.127
CNS0095604Slightly white alabastrum(tetraploid) 17.687
CNS0095605Slightly white alabastrum(tetraploid) 26.145
CNS0095606Slightly white alabastrum(tetraploid) 37.927
CNS0095607Whole white alabastrum(tetraploid) 18.922
CNS0095608Whole white alabastrum(tetraploid) 29.624
CNS0095609Whole white alabastrum(tetraploid) 39.914
CNS0095610Silvery flower (tetraploid) 17.626
CNS0095611Silvery flower (tetraploid) 26.756
CNS0095612Silvery flower (tetraploid) 34.665
CNS0095613Golden flower (tetraploid) 13.560
CNS0095614Golden flower (tetraploid) 25.670
CNS0095615Golden flower (tetraploid) 39.891
CRA001975CRR073297Stem 111.781
CRR073298Stem 210.940
CRR073299Stem 34.469
CRR073300Leaf 112.640
CRR073301Leaf 210.423
CRR073302Leaf 34.465
CRR073303Juvenile bud 16.470
CRR073304Juvenile bud 23.512
CRR073305Juvenile bud 37.951
CRR073306Third green 12.701
CRR073307Third green 21.938
CRR073308Third green 32.984
CRR073309Second white 11.692
CRR073310Second white 23.406
CRR073311Second white 33.108
CRR073312Silver flowering 14.990
CRR073313Silver flowering 24.231
CRR073314Silver flowering 34.553
CRR073315Gold flowering 12.161
CRR073316Gold flowering 23.471
CRR073317Gold flowering 31.606
CRR073318Tawny withering 111.532
CRR073319Tawny withering 29.363
CRR073320Tawny withering 36.050