Gene detail

Detail information of GWHGAAZE009748

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004290634.1	2.1615E-160	PREDICTED: zinc finger protein NUTCRACKER-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|O22759\|IDD12_ARATH	7E-124	Protein indeterminate-domain 12 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|B9H8D5\|B9H8D5_POPTR	5E-149	Zinc finger family protein {ECO:0000313\|EMBL:EEE93793.2}
TAIR10	AT4G02670.1	3E-95	indeterminate(ID)-domain 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116497912	116501054	-
GWHAAZE00000002	mRNA	116497912	116501054	-
GWHAAZE00000002	exon	116500901	116501054	-
GWHAAZE00000002	exon	116500294	116500693	-
GWHAAZE00000002	exon	116497912	116498440	-
GWHAAZE00000002	CDS	116500901	116501054	-
GWHAAZE00000002	CDS	116500294	116500693	-
GWHAAZE00000002	CDS	116497912	116498440	-

Transcript Sequence
>GWHTAAZE009760 ATGTCTAATTCAACTTCTCTGTCTGAGGAAGCTAGTATTGTTTCCTCTGTTACTAGGGTTCATGACTTTAGTAGCTTAAATCCAATGTTTTCAAACTTTTCTTCTCAGCAACCAAACAAGATCAAGAAGAAAAGAAATCTCCCAGGAAACCCAGCCCCTGATGCTGAAGTAATTGCATTATCACCAAAGAGTCTAATGGCTACAAATAGATTCGTGTGTGAGATATGCAACAAGGGGTTTCAGAGAGATCAGAACCTGCAACTACACAGGAGAGGTCATAATTTACCATGGAAGTTGAAGCAGAGAAACAGCAAAGATATAATAAGGAAGAGAGTGTACGTTTGCCCAGAGAGTTCATGTGTACACCACCATCCTTCAAGGGCACTTGGTGATCTTACAGGGATCAAGAAACATTTCTGCAGAAAACATGGAGAGAAGAAATGGAAGTGTGATAAATGTTCAAAGATCTATGCAGTTCAATCTGATTGGAAGGCTCACTCTAAAACCTGTGGAACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAAGATAGCTTTGTTACTCACAGAGCGTTCTGTGATGCTTTAGCTGAAGAAAGCGCTAGACTCTCCTCCTGTTCGAACCCTAATTTCTCAACCCTAAACCCATCATCCCCCCCTCTTTACCCTTTCTCATCACCCCAGTTATTCACCCCCCTCCACTGGGACCCAACCCAAAACCCTAACCCTAATTCCACTCAAAACCCACTTCACATTATTAATAAGCCCCAGACCATCCATCACCCCATCAACAAGAACAACTTCATAAACTCACCCTTCCACGTCAGCTCGTACCCCGCCACGTCAGCTCACCTATCTGCCACCGCACTGCTGCAGAAGGCCGGTTCTTTCGGTGCACAGCCTGTTGGTCACGTGCCCTGCACAATGACCCGGTTGGACATGGGAAGGCTGGGTCACGTGACGACCGTAGGTAGTATTGCCAGCTGGCAGCAGAAGAGTGACAGGTTGACTAGGGACTTCCTAGGTTTGACTGCGGAAGAGGGTAATAGTGGAAGAAGAGGAGGGAATGTTGAC

Network for GWHGAAZE009748

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	71	93	0.0034

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.899
	SRR3591706	second leaf	8.983
	SRR3591707	mature leaf	4.809
	SRR3591708	Shoot apex	10.462
	SRR3591709	Stem	4.794
	SRR3591710	White floral bud	0.571
	SRR3591711	White flower	2.000
	SRR3591712	Green floral bud	1.173
	SRR3591713	Yellow flower	0.643
SRP173429	SRR8316895	Juvenile bud stage	3.937
	SRR8316896	Juvenile bud stage	4.019
	SRR8316897	Juvenile bud stage	1.017
	SRR8316894	Third green stage	2.246
	SRR8316900	Third green stage	3.371
	SRR8316901	Third green stage	2.424
	SRR8316898	Complete white stage	0.111
	SRR8316899	Complete white stage	1.984
	SRR8316903	Complete white stage	0.919
	SRR8316902	Silver flowering stage	0.187
	SRR8316904	Silver flowering stage	0.225
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.054
	SRR8316907	Gold flowering stage	0.192
	SRR8316908	Gold flowering stage	0.996
SRP132670	SRR6706286	Control	1.644
	SRR6706287	Light intensity 50%	1.905
	SRR6706288	Light intensity 20%	1.354
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.012
	CNS0095593	Slightly white alabastrum(diploid) 2	1.248
	CNS0095594	Slightly white alabastrum(diploid) 3	1.802
	CNS0095595	Whole white alabastrum(diploid) 2	1.617
	CNS0095596	Whole white alabastrum(diploid) 3	0.269
	CNS0095597	Whole white alabastrum(diploid) 4	0.919
	CNS0095598	Silvery flower (diploied) 1	6.235
	CNS0095599	Silvery flower (diploied) 2	3.264
	CNS0095600	Silvery flower (diploied) 3	3.435
	CNS0095601	Golden flower (diploid) 1	2.538
	CNS0095602	Golden flower (diploid) 2	3.961
	CNS0095603	Golden flower (diploid) 3	2.670
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.854
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.311
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.509
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.913
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.208
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.803
	CNS0095610	Silvery flower (tetraploid) 1	0.369
	CNS0095611	Silvery flower (tetraploid) 2	1.575
	CNS0095612	Silvery flower (tetraploid) 3	0.779
	CNS0095613	Golden flower (tetraploid) 1	0.045
	CNS0095614	Golden flower (tetraploid) 2	0.386
	CNS0095615	Golden flower (tetraploid) 3	0.455
CRA001975	CRR073297	Stem 1	2.332
	CRR073298	Stem 2	3.188
	CRR073299	Stem 3	2.636
	CRR073300	Leaf 1	1.987
	CRR073301	Leaf 2	2.602
	CRR073302	Leaf 3	0.843
	CRR073303	Juvenile bud 1	1.441
	CRR073304	Juvenile bud 2	0.871
	CRR073305	Juvenile bud 3	0.911
	CRR073306	Third green 1	0.558
	CRR073307	Third green 2	2.292
	CRR073308	Third green 3	0.644
	CRR073309	Second white 1	0.324
	CRR073310	Second white 2	0.428
	CRR073311	Second white 3	0.148
	CRR073312	Silver flowering 1	0.290
	CRR073313	Silver flowering 2	0.768
	CRR073314	Silver flowering 3	0.109
	CRR073315	Gold flowering 1	0.462
	CRR073316	Gold flowering 2	1.141
	CRR073317	Gold flowering 3	0.206
	CRR073318	Tawny withering 1	5.530
	CRR073319	Tawny withering 2	4.083
	CRR073320	Tawny withering 3	8.839