Gene detail

Detail information of GWHGAAZE009750

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010646117.1	0	PREDICTED: uncharacterized protein LOC100263200 [Vitis vinifera]
Swissprot	tr\|Q93YS2\|P2C51_ARATH	1E-138	Probable protein phosphatase 2C 51
trEMBL	tr\|B9S4N3\|B9S4N3_RICCO	0	Protein phosphatase 2c, putative {ECO:0000313\|EMBL:EEF41357.1}
TAIR10	AT3G63340.1	0	Protein phosphatase 2C family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116530535	116551378	+
GWHAAZE00000002	mRNA	116530535	116551378	+
GWHAAZE00000002	exon	116530535	116530736	+
GWHAAZE00000002	exon	116532348	116532519	+
GWHAAZE00000002	exon	116533336	116533441	+
GWHAAZE00000002	exon	116533533	116533692	+
GWHAAZE00000002	exon	116533857	116534118	+
GWHAAZE00000002	exon	116534318	116534342	+
GWHAAZE00000002	exon	116534426	116534642	+
GWHAAZE00000002	exon	116534807	116534880	+
GWHAAZE00000002	exon	116536674	116536824	+
GWHAAZE00000002	exon	116537057	116537243	+
GWHAAZE00000002	exon	116543673	116543907	+
GWHAAZE00000002	exon	116545184	116545669	+
GWHAAZE00000002	exon	116546078	116546135	+
GWHAAZE00000002	exon	116547032	116547119	+
GWHAAZE00000002	exon	116549151	116549225	+
GWHAAZE00000002	exon	116550959	116551012	+
GWHAAZE00000002	exon	116551231	116551378	+
GWHAAZE00000002	CDS	116530535	116530736	+
GWHAAZE00000002	CDS	116532348	116532519	+
GWHAAZE00000002	CDS	116533336	116533441	+
GWHAAZE00000002	CDS	116533533	116533692	+
GWHAAZE00000002	CDS	116533857	116534118	+
GWHAAZE00000002	CDS	116534318	116534342	+
GWHAAZE00000002	CDS	116534426	116534642	+
GWHAAZE00000002	CDS	116534807	116534880	+
GWHAAZE00000002	CDS	116536674	116536824	+
GWHAAZE00000002	CDS	116537057	116537243	+
GWHAAZE00000002	CDS	116543673	116543907	+
GWHAAZE00000002	CDS	116545184	116545669	+
GWHAAZE00000002	CDS	116546078	116546135	+
GWHAAZE00000002	CDS	116547032	116547119	+
GWHAAZE00000002	CDS	116549151	116549225	+
GWHAAZE00000002	CDS	116550959	116551012	+
GWHAAZE00000002	CDS	116551231	116551378	+

Transcript Sequence
>GWHTAAZE009762 ATGGTATACAAAGAAGGCGGTGCACCAGCCGTGTTTCAGTCTCCGAAATGCCCCCGCTGGAAACTATCAGATTATGGTTCCCGCTCTAAATCGCGATCCCGATCACCGACGATGACATGTCAGTCGGCCGTTCACAAGGGACGACGAAAGTACCAGGAGGATCGCACCTTTTGCTCTCTCGATCTTCACATTCCCTTTCCAGGTCCAACGGGGATCACTGATGTTTCAGTTGGTATTGTGGCAGTTTTTGATGGTCACAATGGTGTTGAAGCTAGTGAAATGGCTTCAAAATTATTATTAGAGTATTTCACACTGCATACGCATTTTCTTCTTGATACAACATTTTCTATTTTATCAAAAAAACCGATGCGAAGGTTTAAGCTTAGTCTGTCGGCAATCTTTGATGGATCTTTTCACCTGGAAATTCTGAAGGAGTCATTGCTGAGGGCAATTCATGATATCGATGCATCTTTTTCTAAGGAAGCATCTAGAAACAATTTTGATTCAGGTTCTACAGCCACAGTTATATTAATAGCAGATGGTCAAATTTTAGTAGCCAATATTGGAGACTCGAAGGCCTTTTTGTGCTCTGAGATATTTCAGTCTCCTTCTGAGGCTAAAGGTCAGAAGGATCTTGGCTCTACTTTATTAAGGTTGTACCGACAGAAAAGACAGGATGGAACTGTTTCACGCATAAAAGACGGGGGATTGAAACTGGAAGCTTCCAATGGGTTGGCACATTTCCATGCAAAGGAACTTACAAGAGATCACCATCCTGATAGAGATGACGAGAAGGTCCGAGTAGAATCTGCTGGAGGTTATGTTCTTCAGTGGGGTGGTGTCTCTAGAATCAACGGTCAGTTGGCTGTTTCTCGAGCTATTGGAGATGTGTCCTTTAAAAGTTATGGGGTCATATCTGTTCCCGAGGATGTTTGTGATCTGCTTTGGGAAATACATACTTATGGTGCTGTCAGCTCGGAACCCAGTTCCTTGTGCTCATATTCGCTAGCGGATTGCATAGTAAATACTGCATTTCAAAAAGGCAGCATGGATAACTTGGCAGCCGTTGTGGTTCCATTTAGATCAACTGGTTTTTCCAGCACAGGGCTGCAAGAAAATTGTGATTCCATTTATGAACGGTCAGGTGACAACAACCCTTCTGAACTCATTGAATTGGAGCACGCCCCTCCGATTATTGGCAAGTTTGATAGGTTATTGGTTAAAGGAAAACACAGCAGCTTTGCATGTTTCTATTTATCAGAGAACCTCAATGAAAATGACGATTACACATTCTGGGCGCAGAAGGATGACAAAGAGAATATATACGACTCACCACCAGCTTTACCTGATGCCATTGATCACTGCTGTAGCGGACCCTTAAATTTGTATACCGACCAAAATATGTGCATGCATTTTGGGATGACTACTGATGGTGATAAAGATCAATGCATAAATATGGAAGGCTTCGCTAGTTTTCTTGGTTTGCTTGAATCAATTCCTGTTCATAATATTGGTTCAAATGATGAATCTCATGGGCATGCAATGCCTGACTCAAGGTACAGATTGAAGAAAAGGTTTGACCGTGGATCATATGGTGAAGTTTGGCTGGCTTTCCATTGGGATTGTTCTCAAGGCAGTGATGCTTCAACCTGGAGTCTGAAAAACAACAATTTCCCTTTTAGTGCCATTCATCTTGGAACTCTTGATGGAGGTTCAGAAAGAGGCCCATCCGCTCAAGATTGTAATTCTGGTCCTCCAGATGATAGCATGTTCATTTTGAAGCGTATAATGGTGGAGAGAGGGGCCACTGTGTACTTAAGTGGTCTGAGGGAGAAGTATTTCGGTGAAATATTTCTTAATGCCTCTAAGAATTTAGGAGGTTTGTTATCATCGGGAATATCAGACTCTTTCTTAAAGGAATCACCTGCTGATAAGGAATCAGTTGCACAAGAGATAGAGAGCACCTGGAGTTCTGCAAGTGCATTCCCAAGAAAAAGTAAATTGCTGAGTGCTGCTCATGAAGAAGGCTTGAATCATATTGCGAGATATGTGGAGTCTTTTGAGTCTCGATCTAATGAAATATGGCTTGTATTTCGTCATGAAGGCATTTCCTTGTCAAAGCTTCTGTACACTGCAGAAGAAGTAGAAGATAGTAATCGTGAAGTAAAGGATGAACACTTAAAACGCATTCAGGTGTTGCATCCATCGAAATGGTGGCATTGGTTGAAGACAACAAAAGTAGGACAAGCAGAAATGTGCGATCTTATATGGCAATTGTTGATGGCACTCAAGTCCTGTCATGACCGTAATGTCACTCACAGGGATATTAAACCTGAAAACATGGTCATTTGCTTTGAAGATCCGGATTCTGGGAGATGCTTGAAAGGAAGCCCAAGTGGAGATAAGAACTATACAACTAGAATGCGCATTATTGACTTTGGGAGCGCAATGGATGAGTTCACGGTGAAGCATTTATATGGGTCTGTGGGCCCTTCTAGGGCCGAACAAACTTATGAGTATACTCCTCCGGAAGCTTACCTAAACGCTAGTTGGTATGATATGTGGAGTGTTGGTGTTGTGATCTTAGAGTTGATTTTGGGATCACCAAACGTGTTTCAAATAAATGCTTTAACACGTGCTCTTTTGGATCAACATCTTGATGGTTGGAATGATGGATTGAAGGAACTCGCATACAAGTGA

Network for GWHGAAZE009750

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	52	197	5.40E-11
PF00481.22	PP2C	251	328	6.20E-17
PF00069.26	Pkinase	739	874	7.80E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_GSKL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.409
	SRR3591706	second leaf	6.383
	SRR3591707	mature leaf	7.976
	SRR3591708	Shoot apex	10.631
	SRR3591709	Stem	14.421
	SRR3591710	White floral bud	9.856
	SRR3591711	White flower	9.129
	SRR3591712	Green floral bud	10.667
	SRR3591713	Yellow flower	7.305
SRP173429	SRR8316895	Juvenile bud stage	5.237
	SRR8316896	Juvenile bud stage	6.518
	SRR8316897	Juvenile bud stage	4.114
	SRR8316894	Third green stage	3.467
	SRR8316900	Third green stage	5.221
	SRR8316901	Third green stage	6.210
	SRR8316898	Complete white stage	2.407
	SRR8316899	Complete white stage	7.953
	SRR8316903	Complete white stage	5.306
	SRR8316902	Silver flowering stage	2.262
	SRR8316904	Silver flowering stage	4.966
	SRR8316905	Silver flowering stage	2.134
	SRR8316906	Gold flowering stage	5.184
	SRR8316907	Gold flowering stage	4.687
	SRR8316908	Gold flowering stage	5.316
SRP132670	SRR6706286	Control	3.022
	SRR6706287	Light intensity 50%	3.988
	SRR6706288	Light intensity 20%	3.960
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.727
	CNS0095593	Slightly white alabastrum(diploid) 2	3.626
	CNS0095594	Slightly white alabastrum(diploid) 3	3.105
	CNS0095595	Whole white alabastrum(diploid) 2	3.495
	CNS0095596	Whole white alabastrum(diploid) 3	1.587
	CNS0095597	Whole white alabastrum(diploid) 4	3.157
	CNS0095598	Silvery flower (diploied) 1	7.240
	CNS0095599	Silvery flower (diploied) 2	5.392
	CNS0095600	Silvery flower (diploied) 3	5.539
	CNS0095601	Golden flower (diploid) 1	5.922
	CNS0095602	Golden flower (diploid) 2	5.322
	CNS0095603	Golden flower (diploid) 3	5.972
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.560
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.053
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.289
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.348
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.347
	CNS0095610	Silvery flower (tetraploid) 1	7.009
	CNS0095611	Silvery flower (tetraploid) 2	7.500
	CNS0095612	Silvery flower (tetraploid) 3	6.968
	CNS0095613	Golden flower (tetraploid) 1	4.116
	CNS0095614	Golden flower (tetraploid) 2	5.667
	CNS0095615	Golden flower (tetraploid) 3	3.810
CRA001975	CRR073297	Stem 1	8.149
	CRR073298	Stem 2	5.676
	CRR073299	Stem 3	2.817
	CRR073300	Leaf 1	6.296
	CRR073301	Leaf 2	4.883
	CRR073302	Leaf 3	1.979
	CRR073303	Juvenile bud 1	2.104
	CRR073304	Juvenile bud 2	1.521
	CRR073305	Juvenile bud 3	2.561
	CRR073306	Third green 1	0.586
	CRR073307	Third green 2	0.233
	CRR073308	Third green 3	0.626
	CRR073309	Second white 1	0.680
	CRR073310	Second white 2	0.648
	CRR073311	Second white 3	0.824
	CRR073312	Silver flowering 1	0.869
	CRR073313	Silver flowering 2	0.482
	CRR073314	Silver flowering 3	0.256
	CRR073315	Gold flowering 1	1.160
	CRR073316	Gold flowering 2	2.541
	CRR073317	Gold flowering 3	0.722
	CRR073318	Tawny withering 1	3.222
	CRR073319	Tawny withering 2	3.125
	CRR073320	Tawny withering 3	3.447