Detail information of GWHGAAZE009754


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03670.13.697E-101unnamed protein product [Coffea canephora]
Swissprottr|Q8GY55|TIF4B_ARATH2E-27Protein TIFY 4B
trEMBLtr|A0A068U539|A0A068U539_COFCA1E-101Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03670.1}
TAIR10AT4G14720.15E-25TIFY domain/Divergent CCT motif family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene116629230116634063-
GWHAAZE00000002mRNA116629230116634063-
GWHAAZE00000002exon116633926116634063-
GWHAAZE00000002exon116633600116633763-
GWHAAZE00000002exon116631354116631444-
GWHAAZE00000002exon116631091116631244-
GWHAAZE00000002exon116630629116630694-
GWHAAZE00000002exon116630256116630366-
GWHAAZE00000002exon116629795116629855-
GWHAAZE00000002exon116629427116629685-
GWHAAZE00000002exon116629230116629319-
GWHAAZE00000002CDS116633926116634063-
GWHAAZE00000002CDS116633600116633763-
GWHAAZE00000002CDS116631354116631444-
GWHAAZE00000002CDS116631091116631244-
GWHAAZE00000002CDS116630629116630694-
GWHAAZE00000002CDS116630256116630366-
GWHAAZE00000002CDS116629795116629855-
GWHAAZE00000002CDS116629427116629685-
GWHAAZE00000002CDS116629230116629319-
Transcript Sequence

Network for GWHGAAZE009754

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06200.15tify1121402.40E-15
PF09425.11Jas_motif2472669.40E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTify

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.662
SRR3591706second leaf11.525
SRR3591707mature leaf11.347
SRR3591708Shoot apex20.298
SRR3591709Stem19.111
SRR3591710White floral bud14.142
SRR3591711White flower23.629
SRR3591712Green floral bud11.010
SRR3591713Yellow flower21.174
SRP173429 SRR8316895Juvenile bud stage 15.627
SRR8316896Juvenile bud stage 17.323
SRR8316897Juvenile bud stage 7.254
SRR8316894Third green stage 5.735
SRR8316900Third green stage 9.253
SRR8316901Third green stage 10.739
SRR8316898Complete white stage 2.068
SRR8316899Complete white stage 11.427
SRR8316903Complete white stage 5.070
SRR8316902Silver flowering stage6.775
SRR8316904Silver flowering stage7.294
SRR8316905Silver flowering stage3.361
SRR8316906Gold flowering stage 8.479
SRR8316907Gold flowering stage 10.913
SRR8316908Gold flowering stage 12.563
SRP132670SRR6706286Control12.843
SRR6706287Light intensity 50%11.031
SRR6706288Light intensity 20%10.379
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.335
CNS0095593Slightly white alabastrum(diploid) 210.887
CNS0095594Slightly white alabastrum(diploid) 313.645
CNS0095595Whole white alabastrum(diploid) 28.213
CNS0095596Whole white alabastrum(diploid) 35.502
CNS0095597Whole white alabastrum(diploid) 46.317
CNS0095598Silvery flower (diploied) 123.670
CNS0095599Silvery flower (diploied) 218.858
CNS0095600Silvery flower (diploied) 316.448
CNS0095601Golden flower (diploid) 119.043
CNS0095602Golden flower (diploid) 216.160
CNS0095603Golden flower (diploid) 316.841
CNS0095604Slightly white alabastrum(tetraploid) 110.937
CNS0095605Slightly white alabastrum(tetraploid) 29.832
CNS0095606Slightly white alabastrum(tetraploid) 313.538
CNS0095607Whole white alabastrum(tetraploid) 16.141
CNS0095608Whole white alabastrum(tetraploid) 24.581
CNS0095609Whole white alabastrum(tetraploid) 37.822
CNS0095610Silvery flower (tetraploid) 120.403
CNS0095611Silvery flower (tetraploid) 221.038
CNS0095612Silvery flower (tetraploid) 38.405
CNS0095613Golden flower (tetraploid) 111.962
CNS0095614Golden flower (tetraploid) 218.201
CNS0095615Golden flower (tetraploid) 39.402
CRA001975CRR073297Stem 125.316
CRR073298Stem 220.944
CRR073299Stem 322.213
CRR073300Leaf 111.435
CRR073301Leaf 214.537
CRR073302Leaf 311.095
CRR073303Juvenile bud 18.774
CRR073304Juvenile bud 25.287
CRR073305Juvenile bud 311.539
CRR073306Third green 11.740
CRR073307Third green 22.486
CRR073308Third green 33.523
CRR073309Second white 14.063
CRR073310Second white 24.853
CRR073311Second white 34.787
CRR073312Silver flowering 14.316
CRR073313Silver flowering 24.130
CRR073314Silver flowering 34.080
CRR073315Gold flowering 16.812
CRR073316Gold flowering 210.052
CRR073317Gold flowering 34.266
CRR073318Tawny withering 117.286
CRR073319Tawny withering 218.243
CRR073320Tawny withering 316.255