Gene detail

Detail information of GWHGAAZE009755

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009777295.1	5.2128E-103	PREDICTED: chlorophyllase-1-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|O22527\|CLH1_ARATH	5E-73	Chlorophyllase-1
trEMBL	tr\|F6HI76\|F6HI76_VITVI	5E-103	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51922.1}
TAIR10	AT1G19670.1	6E-61	chlorophyllase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116641562	116644203	-
GWHAAZE00000002	mRNA	116641562	116644203	-
GWHAAZE00000002	exon	116644123	116644203	-
GWHAAZE00000002	exon	116642485	116642721	-
GWHAAZE00000002	exon	116641562	116642334	-
GWHAAZE00000002	CDS	116644123	116644203	-
GWHAAZE00000002	CDS	116642485	116642721	-
GWHAAZE00000002	CDS	116641660	116642334	-
GWHAAZE00000002	three_prime_UTR	116641562	116641659	-

Transcript Sequence
>GWHTAAZE009767 ATGGTGGTGGTGAGAGAGAATAAGAAGTTGTTTTCGAAAAAGAAGTCGCCAAAGAAGAAGACAATAGTGGTGGTGGTAGTGCCTGCTTTAAGTACATCAGTGTTTGATAAAGGAAACCTGAACGTGAAACAAATTAAATTGAAAAAATCAGATGCTTCAAGACCACCAAGCCCATTGTTCATCCTTTCACCAATACAAAAAGACACATACCCTGTTCTTCTTTTCCGTCATGGCTTTTGCATTCTCGACACTTTTTACACTCGTCTCTTTGAATTCATTTCTTCCCACGGTTTCATAGTCGTTGCTATTGGTGACCAAGTGAACCTCTTTACTCTCTTCACATGTTGTTGCAGTAACAACGTTGAGGCAGCAGCTAAAGTCGCGGATTGGCTATCAAACGGTGGCCTAGATTCGAGTTTACCCGAAAACGTCAAACCGGACCTCAAGAAGGTCGCTCTAGCAGGCCACAGCAAAGGCGGCAAAACAGCATTCTCATTAGCACTAGGCCTAGCCGAAACATCCCTCGAATTCTCGGCCTTAATTGGGATCGACCCAGTGGCTGGTCCCTGCATATTGTGCCGACCTCCGCCCAGAATTCTCACCTACATCCCTCGTGCTTTTAGTCAAAAAATTCCCACAGCCATAATCGGCACGGGCTTAGGCTCCGAGTGGAAGTGCATTGTGCCACCTTTTGCACCATACGGGTGCAATCATTCGGAGTTTTACAATGAGTCTGAGCCGCCGGCGAGCTATTTCCTTGCTAAGGATTATGGTCACACGGATATGTTGGATGATTTTCCGGCGTGGGTATGTAGTTTTTTTGTGAAGAGTGGCAAGGGTCCTAAGGATTTGATGAGGAGGAGTGTCGGAGGGATTGTTGTGGCATTTTTGGAGGCCAAGTTGAAGGGGAATCCTGAGGATTTTAATGCAATTGTGGATGATCCTTCTGTCGCTCCTATTTTGCTCGATCCTGTTATTTCTGTTCCTGCGTAGATTTGTGTTCTTCATTTATTAATTATAATTAAGGTGGTGAACATTTGTGTAAACTGATTAATAATTAAATTGTGAAATTATGTTGAATTGTGGATTAA

Network for GWHGAAZE009755

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07224.12	Chlorophyllase	31	322	5.00E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08099	E3.1.1.14	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0015996	biological_process	chlorophyll catabolic process
GO:0047746	molecular_function	chlorophyllase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.230
	SRR3591706	second leaf	3.132
	SRR3591707	mature leaf	14.819
	SRR3591708	Shoot apex	2.722
	SRR3591709	Stem	1.864
	SRR3591710	White floral bud	35.052
	SRR3591711	White flower	46.823
	SRR3591712	Green floral bud	4.659
	SRR3591713	Yellow flower	38.462
SRP173429	SRR8316895	Juvenile bud stage	13.341
	SRR8316896	Juvenile bud stage	5.358
	SRR8316897	Juvenile bud stage	2.324
	SRR8316894	Third green stage	0.364
	SRR8316900	Third green stage	1.024
	SRR8316901	Third green stage	2.126
	SRR8316898	Complete white stage	1.465
	SRR8316899	Complete white stage	2.917
	SRR8316903	Complete white stage	3.618
	SRR8316902	Silver flowering stage	2.561
	SRR8316904	Silver flowering stage	45.857
	SRR8316905	Silver flowering stage	1.054
	SRR8316906	Gold flowering stage	2.487
	SRR8316907	Gold flowering stage	2.830
	SRR8316908	Gold flowering stage	3.619
SRP132670	SRR6706286	Control	5.416
	SRR6706287	Light intensity 50%	2.684
	SRR6706288	Light intensity 20%	3.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.317
	CNS0095593	Slightly white alabastrum(diploid) 2	0.807
	CNS0095594	Slightly white alabastrum(diploid) 3	1.472
	CNS0095595	Whole white alabastrum(diploid) 2	0.693
	CNS0095596	Whole white alabastrum(diploid) 3	0.777
	CNS0095597	Whole white alabastrum(diploid) 4	1.369
	CNS0095598	Silvery flower (diploied) 1	11.056
	CNS0095599	Silvery flower (diploied) 2	27.604
	CNS0095600	Silvery flower (diploied) 3	7.067
	CNS0095601	Golden flower (diploid) 1	13.483
	CNS0095602	Golden flower (diploid) 2	12.098
	CNS0095603	Golden flower (diploid) 3	10.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.912
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.647
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.094
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.804
	CNS0095610	Silvery flower (tetraploid) 1	65.094
	CNS0095611	Silvery flower (tetraploid) 2	36.812
	CNS0095612	Silvery flower (tetraploid) 3	38.606
	CNS0095613	Golden flower (tetraploid) 1	3.917
	CNS0095614	Golden flower (tetraploid) 2	126.492
	CNS0095615	Golden flower (tetraploid) 3	36.181
CRA001975	CRR073297	Stem 1	18.816
	CRR073298	Stem 2	12.388
	CRR073299	Stem 3	34.551
	CRR073300	Leaf 1	0.433
	CRR073301	Leaf 2	0.283
	CRR073302	Leaf 3	0.282
	CRR073303	Juvenile bud 1	0.353
	CRR073304	Juvenile bud 2	3.659
	CRR073305	Juvenile bud 3	0.209
	CRR073306	Third green 1	4.046
	CRR073307	Third green 2	4.868
	CRR073308	Third green 3	22.210
	CRR073309	Second white 1	2.094
	CRR073310	Second white 2	4.374
	CRR073311	Second white 3	1.067
	CRR073312	Silver flowering 1	0.429
	CRR073313	Silver flowering 2	0.530
	CRR073314	Silver flowering 3	0.093
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	1.310
	CRR073317	Gold flowering 3	1.448
	CRR073318	Tawny withering 1	0.595
	CRR073319	Tawny withering 2	5.264
	CRR073320	Tawny withering 3	1.213