Gene detail

Detail information of GWHGAAZE009778

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13137.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	0.000000001	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|F6HI46\|F6HI46_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51892.1}
TAIR10	AT1G05380.2	8E-139	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116939833	116953154	-
GWHAAZE00000002	mRNA	116939833	116953154	-
GWHAAZE00000002	exon	116939833	116941127	-
GWHAAZE00000002	exon	116942102	116942315	-
GWHAAZE00000002	exon	116942963	116943062	-
GWHAAZE00000002	exon	116943747	116943833	-
GWHAAZE00000002	exon	116943977	116944018	-
GWHAAZE00000002	exon	116944633	116944680	-
GWHAAZE00000002	exon	116944757	116944977	-
GWHAAZE00000002	exon	116948488	116948570	-
GWHAAZE00000002	exon	116948711	116948849	-
GWHAAZE00000002	exon	116949855	116953154	-
GWHAAZE00000002	CDS	116949855	116953154	-
GWHAAZE00000002	CDS	116948711	116948849	-
GWHAAZE00000002	CDS	116948488	116948570	-
GWHAAZE00000002	CDS	116944757	116944977	-
GWHAAZE00000002	CDS	116944633	116944680	-
GWHAAZE00000002	CDS	116943977	116944018	-
GWHAAZE00000002	CDS	116943747	116943833	-
GWHAAZE00000002	CDS	116942963	116943062	-
GWHAAZE00000002	CDS	116942102	116942315	-
GWHAAZE00000002	CDS	116939833	116941127	-

Transcript Sequence
>GWHTAAZE009790 ATGAAAGAGGGATTGAGATCTAGTACTCTTTCTAAGAGAATCAAGGACAGCTTTGATTTGAGGTCAAAGAACCGCAATGATGCTACGGTTGGCGAGTATGAATATGTGGAATGTGTCAAAGGCACTGGTGCTGGCATTAATTATAGTGAGGCTGACAGTGATGGAAGTAGGGGGAAGCTTGGTAAGAGCAGGAGGCGGGGGAGGAAAAGAAAGAATGCAGCGAGTCCAGAGAATGTTGACTATGCCATCAGTAAGGCTGATAGGGAGAAGATAGGATCTTCTATGGTTTCAAGGGATTCATTTTCTGCTAACGATTTAGTCTTGTCGGAGAGAGAAGTTGAGGTAGGAATTCAGGTGGAGGATATGGAATGCAGCCAAAAGGCAGATGTTGGTCTCGCAGTTTTTGTCAATGCCAATACTGTTACTCATAAAGACAGACACGAGCTTGGGAATGGCCACGAAGTGAGAAACAAAGAAAATGTGGAAAGTCCAGAGAAGGGCGATGATGCTACTATTAACAATTCAGACGAGGAGAAGATAGATTCACATTTGATTTCAAAGTATTCGGATCCTGCTGAGGATTTAGCTATTTCTTCCCCAGAAGGAAAAGCCGAGGCGAGAAGTGGGACTACCAATGTGCAATTCAACAAAGAAGCTGGTGTTTGTGTTGAACAAGGTGTCAGTGCCATCATGGACCTCAAAACTGATGCTAATAATGAGAGTGATACAAGCAATCTTGGTGAATCTCAGCAGGGGATAAAAAGAAAAAAGGCAGAGATCCCAAAGAAGGATGAAACCGCCATCAGTGTTGCTGATGCAGAGAAGATAGAGTTGTCTTTGATTCCAAACTGTTTGGATCCTGATAATGGTTTAGTTATTTCTTCCCCAGGAAGACACATCGAGGATCAAAGTGGCACTCAGCCCATGAAATGCAGCAAATACGCGGATGCTGGTGTTGAAAATAATGCCAGTGGCAAGGGTGATACCATGATTGAAGCTGGTTATGAGAAAGATACAAGCAATGGTGAAGCCCCTTCTGATCCTTCTAAGGATTTTGTTATTTCTTCCCTAGAAGGAAAACTAGAAGGAGGAAGGGGACAAGAGCATGTGTACCGCAGCAAAGATGCCAGTTTTGGGGCTGAAGTTGCCAAAGGTACTGATTTCGATATTGACAAAGATGCAAGCAAGCTTGGTAAACCTCCTTCTGAGGGTTCAGTTCCTTCTTCCCCCACCAGAGAAGTCAAAGAGGGAAGTTGTACTGAGCGTATTGAATGCAACAAAGACGCGGATGTTCATGTTGAAGTGGGTGTTAATGCCAAGGATCATGCCCTTACTGATTCTTGTAGTCAGATAGATACAAACAAGCTTGGTAAACCACGGCGGGGGAGAAAAAGGAAAAAGGTGAAGAGTCCAAAAAAAGGTGATTTTGCCATTGTTGAAGTTAAAGAGGAGAGAGGTTCACCTTTAAGTTGTTGTGATCAGGATGCTGTTAAACATTCAGTTGCTTTTACACTAGAAAGAAAAGTTAAAGAGGAAATAAGTGAGTTTGAAGAATGTAAGGATGCTGATTTTGGTATTGTTGTGGGTTTCAATGCTGATGGTGATGCCAATGCAAGTATTGATGCTGGTAAAGCTACCGATAAGCAAATAAAGGGCCGGCGGGGGAGGAAAAGGAAAAAGGTTGAGAGCTATGACTGCAATGAAGTCGACGTGGCTGGAAGAAAGAAGGCGAAGGACGTTGAGGTTCAGATTATTGGAAGGGTCTTACGGTCGAGGACAATGGCGATGAGTGGTGGCAAAAAGGTGTTTGAGAGTGGAAGTAATGGGAACCCTGTGCATGGGAAAATAAAGAATGAACCTGATCAAGCAGAGCAAGGAGGGATTGAAACAGAAAGCGACAAAAGCCTTAGACCTACTAGAAGACCAAGAAAAAATATAAAAGGGCGTCGTGGAAGACCGCCTAAGGAAAAGGGGAAAAATGGGGTGTCAGAGGTGATCTGCAAGAAGAAACTAAAGGTAATGGGGTCCAAGAAGTTCGGTAGAGACGTGAGTAAGGTTTACAAGTTTCCAAATGCGTGTAATAAAACTGTGGCATCGAAGTTGATAAGCTATAACAAACCAGAAGTTAATGGTTCAAAGAAACAGTTTGAAATGAAAAAGCACAAAACAGAAAGGGGTATGAGCCGTAGTGAACAACAGCAATTAGTGAGAGACCAAATAGTTAGTATACTCATGAAGGCAGGCTGGACCATTGAACATAGACCCAGGCAAAACAAAGACTACTTGGATGCAGTTTATGTCGACCGTGAAGGAAAAACTCACTGGTCAGTCACTTTGGCGTACATGAAGCTTAAACAGAAAGTTGAAGATGGAGTTGCCGACAGTCAGACAATTTCAGCATATACTCCAATACCGAAGGAGGTTCTCAGCATACTACTGAGGGTGAGAAGAGTGAAGAAAAAGAGAGGTAAGAAAGACAAGGCAGATAAAGAAATTCCTGGAAAAGAGTCCTCACAGAATAAACCTGCGACAAAAAGCATCAGTGGCTCAAAGCGCAAAAACACACAGAATTCTACCCTAAGAGCCGGTGTTGAACTATCAAAGATAAGGAAGAAACGTGCTAGAAGAGCTGGTGTTGAATCAGGTGTTGAACTATCAAAGACAAGAAAGAAATGTACTATAAGAGCCGGTGTTGAATCATCAAAGATGAAAAAGAAAGGGCATACATTACATCGGAAACATCAGTCAGGCATGTCATCATATGGGGGAAAGCCAAGATGGAACAGGGAAGAAAGACTAAGTAGAAAGCCAATGGCTCTGTTGGCTCGTAGCTCTGAGAAGGGGTTGGGTTCAGATGTTGATGGCTTTATAGCATATAATGGGAAACGCAGTCTTCTTTCCTGGATGATTGATTTGGGAACTGTTCTGCCCGGTTGGAAGGTGAAGTATATGAACCCTAGAAAGACCAGAGTGATGGTTGAGGGAAGGATTACCAGAGATGGAATTCACTGTGGTTGCTGTGATGAAATCCTCGGCATGTCAGATTTCGAGTCTCATTCTGGAAGTACTCGATGCCAGCCATTTTATAATATCTATTTAGAATCTGGCATTTCTCTCCTGCAATGCCTAGCAGATTCATGGAGTAAACAAGTGGAATCTGATCATATTGGATTCCATTTTGTAGACTTCGATGGAGATGACCCCAATGATGATACATGCAACATATGTGGAGATGGTGGTGACTTGATCTGTTGTGATGGTTGCCCTTCTACGTTCCATCAGAACTGCTTAAACATAGAAAATTTTCCTTCTGGTGACTGGCGCTGTGTTTACTGTTCATGCAAATTCTGCGGGACTGTTGCTGGGAACACCTCTCCAAGGAATGATTGCAATGAAGTTATCTGTGAATTGCTCACATGCCATTTATGTGAGGAAAAATTTCACATAACGTGCTCACAGGTGAAAGATGCTATCAATGCTAATTCCAAGTGTCAATCGTTTTGTGGGAGGAAATGCCAGGAGGCGCTTCTCGGGGTTAAGCATGAGCTGGAAGAAGGATTTTCATGGACTCTTCTTCAGCGTTGTGATGTTAGCCAGGATATTTCTCTTAGTGGTGCTCCACTGAAGGTTGAAAGCAATTCCAAGTTAGCTGTTGCATTTTCAATCATGGACGAGTGTTTTGTGCCTGTAGTGGACGAGAGAAGTGGGACAAATATGATTCACAATGTTGTTTACAGCTCTGGTGATGTTGTTACAACTTACAAAGTTCCAGCTGAAATGTTTCTTGAATTTGCTCAGTGTGACCCTCGGCAATATGTGCTAAACTTTCCTTGGTCAAACATTAGGCGACTGAACTACAGCAGCTTCGTAACAGCTATTCTGGAGAGGGGTGATGAAATTATCTCGGCAGCATCTATAAGGATCCATGGAAATCAGTTAGCAGAGATGCCATTCATTGGGACTCGTCATGTGTATAGACGTCAAGGGATGTGTAGTCGGCTTCTAAATGCAATTGAATCGGCTCTTTGCTCTCTTGATGTTGAGAAACTGGTCATTCCTGCCATCTCTGAACTTCTTCAAACATGGACTTCAGTTTTTGGTTTCGAGCCCCTTGAAGAAGCAAAGAGACAAGAAATGAAGCGCATGAGTATGGTTGTGTTCCCTGGCACAGATATGTTGCAAAAACCTTTATTAAAGAATTGGTTTGATAAAGGAAACCCTATTCCAGCTTCAGGTTTGAAGGTCGCTGCACTTGGAACTGACCATCAAACTATGCCTGAAGAAGGCCCAGGTAATTCTGGTGTAGGATTATTTACTGGGTCTTCTTCCATTGATTCTCCGGAGGTCATTGTCCAACATGCATGTGGATCAAATGATGAAACTGCTAATGATGCATCTCTTGATCATCTTACCCACGATAACAAACTCGTCATAGTTTCCGAGGGTCCTGCTAGTGTTTCTTCTGAACTTGGACAGCAAGCTCGTGAGGGGATTGATAACGGTACAAATGCTCAATTGGATTCTACTACAAATGGGCCAATCGTTCTCGGTGAATCTGCTGCCAATGACATATCTCATGGTTATCCTATTAACATCCATGGTAACAAACTCGTCAAAGTTTCTGAAGATTTTGCCGGTGTTTCTTCTGAACTGGATGGACATCAAGCCCCCAAGAGGATTGATAAATGTACAAATTCTCGATCTGGTTCTGATGGAAGTGGTGCTGTTATTCTTGTCAAATCTGCTGCTAATGATACAACTCTTGATCATCTTAGTGTGGCCCATGATAAGAAATCATCACATGTTTCCCAGAGTGGGTCTGGTGCAGCAAATTACGAGGCAAAAACTACGCAAATAGCAGATGACAGTAATGAATCTGTTGATTGTGAGCAGACGAGAAAAGCTAAATGTTTTCAAAATGATTGCAATTCTCTAGATGAGGCCTCTATACACCATTCTGCATGTATTTTGTCTTCTCATAAGACTAGTCAAGATGCTGCAAATGACCGAGATGCGCCTTTTGAAACTCGTGATGCTGAAGTGGGCGGTCCTGTTGACAGCAAGCAACTTCCTTCTGTTGCGGCCATCCCTGATTCTACTCTTGAGACCTCTTCCAAGGCTTCTTTTATGAGAAATGGACTTTGCGAGTCCTTGGAACTACAATGTGGTGTTGATAATGATGATATCACTTTGTGCAAGGTTACTACAAATACTGTCCATGGCCTAAAAGATGATTCTGCTGCTCAAACTAGTATACATTTTAATAATGGCTATTCTCAAGAGGAATTTAACTCTGGGTCTCAGGTTGATCACATTAGTGCTACTTTACGTGGTACCGAACTCTTGTGCAACTCGAGCTGTACCTCTAGCAGTTTTACATCATGTAGTGTTCCTGAGGTGATTATACTCTTCAAACTGGATGCTAATACGGTTTATTATGCTGTACCTCTACCACCTTCTAATATTGAGTTTATTCTGCTGCAGGTAGTAGGTTCTTGTAGATTGTTGAAGAGTGGTAACCCATGCTAA

Network for GWHGAAZE009778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16135.6	TDBD	995	1044	2.20E-18
PF00628.30	PHD	1073	1115	6.70E-07

Protein Sequence

>GWHPAAZE009784
MKEGLRSSTLSKRIKDSFDLRSKNRNDATVGEYEYVECVKGTGAGINYSEADSDGSRGKLGKSRRRGRKRKNAASPENVDYAISKADREKIGSSMVSRDSFSANDLVLSEREVEVGIQVEDMECSQKADVGLAVFVNANTVTHKDRHELGNGHEVRNKENVESPEKGDDATINNSDEEKIDSHLISKYSDPAEDLAISSPEGKAEARSGTTNVQFNKEAGVCVEQGVSAIMDLKTDANNESDTSNLGESQQGIKRKKAEIPKKDETAISVADAEKIELSLIPNCLDPDNGLVISSPGRHIEDQSGTQPMKCSKYADAGVENNASGKGDTMIEAGYEKDTSNGEAPSDPSKDFVISSLEGKLEGGRGQEHVYRSKDASFGAEVAKGTDFDIDKDASKLGKPPSEGSVPSSPTREVKEGSCTERIECNKDADVHVEVGVNAKDHALTDSCSQIDTNKLGKPRRGRKRKKVKSPKKGDFAIVEVKEERGSPLSCCDQDAVKHSVAFTLERKVKEEISEFEECKDADFGIVVGFNADGDANASIDAGKATDKQIKGRRGRKRKKVESYDCNEVDVAGRKKAKDVEVQIIGRVLRSRTMAMSGGKKVFESGSNGNPVHGKIKNEPDQAEQGGIETESDKSLRPTRRPRKNIKGRRGRPPKEKGKNGVSEVICKKKLKVMGSKKFGRDVSKVYKFPNACNKTVASKLISYNKPEVNGSKKQFEMKKHKTERGMSRSEQQQLVRDQIVSILMKAGWTIEHRPRQNKDYLDAVYVDREGKTHWSVTLAYMKLKQKVEDGVADSQTISAYTPIPKEVLSILLRVRRVKKKRGKKDKADKEIPGKESSQNKPATKSISGSKRKNTQNSTLRAGVELSKIRKKRARRAGVESGVELSKTRKKCTIRAGVESSKMKKKGHTLHRKHQSGMSSYGGKPRWNREERLSRKPMALLARSSEKGLGSDVDGFIAYNGKRSLLSWMIDLGTVLPGWKVKYMNPRKTRVMVEGRITRDGIHCGCCDEILGMSDFESHSGSTRCQPFYNIYLESGISLLQCLADSWSKQVESDHIGFHFVDFDGDDPNDDTCNICGDGGDLICCDGCPSTFHQNCLNIENFPSGDWRCVYCSCKFCGTVAGNTSPRNDCNEVICELLTCHLCEEKFHITCSQVKDAINANSKCQSFCGRKCQEALLGVKHELEEGFSWTLLQRCDVSQDISLSGAPLKVESNSKLAVAFSIMDECFVPVVDERSGTNMIHNVVYSSGDVVTTYKVPAEMFLEFAQCDPRQYVLNFPWSNIRRLNYSSFVTAILERGDEIISAASIRIHGNQLAEMPFIGTRHVYRRQGMCSRLLNAIESALCSLDVEKLVIPAISELLQTWTSVFGFEPLEEAKRQEMKRMSMVVFPGTDMLQKPLLKNWFDKGNPIPASGLKVAALGTDHQTMPEEGPGNSGVGLFTGSSSIDSPEVIVQHACGSNDETANDASLDHLTHDNKLVIVSEGPASVSSELGQQAREGIDNGTNAQLDSTTNGPIVLGESAANDISHGYPINIHGNKLVKVSEDFAGVSSELDGHQAPKRIDKCTNSRSGSDGSGAVILVKSAANDTTLDHLSVAHDKKSSHVSQSGSGAANYEAKTTQIADDSNESVDCEQTRKAKCFQNDCNSLDEASIHHSACILSSHKTSQDAANDRDAPFETRDAEVGGPVDSKQLPSVAAIPDSTLETSSKASFMRNGLCESLELQCGVDNDDITLCKVTTNTVHGLKDDSAAQTSIHFNNGYSQEEFNSGSQVDHISATLRGTELLCNSSCTSSSFTSCSVPEVIILFKLDANTVYYAVPLPPSNIEFILLQVVGSCRLLKSGNPC

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.118
	SRR3591706	second leaf	4.598
	SRR3591707	mature leaf	3.097
	SRR3591708	Shoot apex	9.997
	SRR3591709	Stem	7.697
	SRR3591710	White floral bud	5.643
	SRR3591711	White flower	6.360
	SRR3591712	Green floral bud	5.358
	SRR3591713	Yellow flower	2.852
SRP173429	SRR8316895	Juvenile bud stage	6.336
	SRR8316896	Juvenile bud stage	6.679
	SRR8316897	Juvenile bud stage	3.539
	SRR8316894	Third green stage	3.732
	SRR8316900	Third green stage	6.612
	SRR8316901	Third green stage	6.515
	SRR8316898	Complete white stage	1.387
	SRR8316899	Complete white stage	7.405
	SRR8316903	Complete white stage	4.255
	SRR8316902	Silver flowering stage	1.817
	SRR8316904	Silver flowering stage	3.360
	SRR8316905	Silver flowering stage	1.365
	SRR8316906	Gold flowering stage	3.948
	SRR8316907	Gold flowering stage	3.539
	SRR8316908	Gold flowering stage	4.437
SRP132670	SRR6706286	Control	5.605
	SRR6706287	Light intensity 50%	6.581
	SRR6706288	Light intensity 20%	6.892
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.666
	CNS0095593	Slightly white alabastrum(diploid) 2	4.781
	CNS0095594	Slightly white alabastrum(diploid) 3	4.047
	CNS0095595	Whole white alabastrum(diploid) 2	3.444
	CNS0095596	Whole white alabastrum(diploid) 3	2.830
	CNS0095597	Whole white alabastrum(diploid) 4	3.684
	CNS0095598	Silvery flower (diploied) 1	7.811
	CNS0095599	Silvery flower (diploied) 2	5.330
	CNS0095600	Silvery flower (diploied) 3	7.397
	CNS0095601	Golden flower (diploid) 1	6.382
	CNS0095602	Golden flower (diploid) 2	8.309
	CNS0095603	Golden flower (diploid) 3	8.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.235
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.346
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.232
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.503
	CNS0095610	Silvery flower (tetraploid) 1	6.533
	CNS0095611	Silvery flower (tetraploid) 2	7.567
	CNS0095612	Silvery flower (tetraploid) 3	6.484
	CNS0095613	Golden flower (tetraploid) 1	2.606
	CNS0095614	Golden flower (tetraploid) 2	5.306
	CNS0095615	Golden flower (tetraploid) 3	3.225
CRA001975	CRR073297	Stem 1	10.474
	CRR073298	Stem 2	10.835
	CRR073299	Stem 3	7.930
	CRR073300	Leaf 1	8.523
	CRR073301	Leaf 2	7.030
	CRR073302	Leaf 3	5.025
	CRR073303	Juvenile bud 1	5.405
	CRR073304	Juvenile bud 2	2.629
	CRR073305	Juvenile bud 3	6.778
	CRR073306	Third green 1	1.073
	CRR073307	Third green 2	0.904
	CRR073308	Third green 3	1.679
	CRR073309	Second white 1	1.370
	CRR073310	Second white 2	2.209
	CRR073311	Second white 3	2.198
	CRR073312	Silver flowering 1	1.433
	CRR073313	Silver flowering 2	1.389
	CRR073314	Silver flowering 3	1.446
	CRR073315	Gold flowering 1	2.027
	CRR073316	Gold flowering 2	3.504
	CRR073317	Gold flowering 3	1.916
	CRR073318	Tawny withering 1	5.879
	CRR073319	Tawny withering 2	5.197
	CRR073320	Tawny withering 3	5.392