Gene detail

Detail information of GWHGAAZE009779

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009598919.1	1.502E-179	PREDICTED: WD repeat-containing protein 5 [Nicotiana tomentosiformis]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	1E-67	Protein Mut11
trEMBL	tr\|A0A022S2J2\|A0A022S2J2_ERYGU	2E-166	Uncharacterized protein {ECO:0000313\|EMBL:EYU46574.1}
TAIR10	AT4G02730.1	2E-113	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116996137	116997527	-
GWHAAZE00000002	mRNA	116996137	116997527	-
GWHAAZE00000002	exon	116996137	116996424	-
GWHAAZE00000002	exon	116996946	116997527	-
GWHAAZE00000002	CDS	116996946	116997527	-
GWHAAZE00000002	CDS	116996137	116996424	-

Transcript Sequence
>GWHTAAZE009791 ATGGCAAGCAGCAGCAACAACCAACAGCCACCGCCGTACCGCCCATATAGACTCGCTAAAACCCTAACATCCCACACTCGAGCCGTATCTTGCGTCAAATTCTCCAACAACGGCAAGCTCTTCGCCTCCGCTTCCCTTGACAAAACCATTATCATCTATTCCACCGAAACCCTATCCCAACTCTCCCGCCTCTCCGGCCACTCCGACGGGGTCTCCGACCTCGCATGGTCCCCGGACTCCCACTACATCTGCTCCGCCTCCGACGATCGCACCCTCCGCATATGGGACTCCACCACCGCCGAGTGCGTCAAAACCCTACGTGGCCACACCGACTTCGTTTTTTGTGTCAATTTTAGCCCTCAGTCGAATCTGATTGTCTCTGGTTCCTTCGATGAGACAGTTAGGGTTTGGGATGTGAAGACCGGGAGATCTGTTCATGTAATTAGGGCTCATTCGATGCCGGTTACTTCAGTGCATTTTAATCGTGACGGTTCGTTGATTGTTTCTGGTAGTCATGACGGGAGTTGTAAGATTTGGGATTCGGCGACTGGTGCGTGCCTGATGACGCTTATTGATGATAAGAAGCTTTGGAACTACACTGCAGGGAAGTTCTTGAAAATTTATGCAGGCCATGTGAACCGAGTGTACTGCATAATGCCAACATTTTCAGTGACTAGTGGAAAGTACATTGTTAGTGGATCTGAGGATCGCTGTGTTTACATATGGGATCTTCAAGGGAAAAACTTAATTCAAAAACTTGAAGGGCACACTGACACCGTCATCTCTGTAACTTGCCACCCCACTGAGAATATAATTGCTTCTGCTGGGCTTGATGGTGATAGGACAGTCAGGGTTTGGATACAAGATTGA

Network for GWHGAAZE009779

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0033

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	20	53	3.60E-05
PF00400.33	WD40	61	96	3.60E-10
PF00400.33	WD40	101	138	2.60E-10
PF00400.33	WD40	143	180	1.00E-08
PF00400.33	WD40	202	243	4.60E-05
PF00400.33	WD40	248	286	0.00042

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.305
	SRR3591706	second leaf	6.688
	SRR3591707	mature leaf	6.254
	SRR3591708	Shoot apex	12.295
	SRR3591709	Stem	10.280
	SRR3591710	White floral bud	10.737
	SRR3591711	White flower	7.842
	SRR3591712	Green floral bud	9.888
	SRR3591713	Yellow flower	7.032
SRP173429	SRR8316895	Juvenile bud stage	7.410
	SRR8316896	Juvenile bud stage	10.535
	SRR8316897	Juvenile bud stage	4.003
	SRR8316894	Third green stage	5.458
	SRR8316900	Third green stage	13.066
	SRR8316901	Third green stage	12.720
	SRR8316898	Complete white stage	4.601
	SRR8316899	Complete white stage	17.461
	SRR8316903	Complete white stage	9.331
	SRR8316902	Silver flowering stage	4.636
	SRR8316904	Silver flowering stage	6.699
	SRR8316905	Silver flowering stage	3.651
	SRR8316906	Gold flowering stage	10.840
	SRR8316907	Gold flowering stage	10.717
	SRR8316908	Gold flowering stage	12.676
SRP132670	SRR6706286	Control	12.402
	SRR6706287	Light intensity 50%	14.870
	SRR6706288	Light intensity 20%	15.631
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.292
	CNS0095593	Slightly white alabastrum(diploid) 2	5.829
	CNS0095594	Slightly white alabastrum(diploid) 3	5.164
	CNS0095595	Whole white alabastrum(diploid) 2	5.290
	CNS0095596	Whole white alabastrum(diploid) 3	4.168
	CNS0095597	Whole white alabastrum(diploid) 4	4.765
	CNS0095598	Silvery flower (diploied) 1	8.517
	CNS0095599	Silvery flower (diploied) 2	8.320
	CNS0095600	Silvery flower (diploied) 3	13.320
	CNS0095601	Golden flower (diploid) 1	6.529
	CNS0095602	Golden flower (diploid) 2	10.303
	CNS0095603	Golden flower (diploid) 3	8.849
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.241
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.800
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.955
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.547
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.850
	CNS0095610	Silvery flower (tetraploid) 1	10.966
	CNS0095611	Silvery flower (tetraploid) 2	10.898
	CNS0095612	Silvery flower (tetraploid) 3	11.472
	CNS0095613	Golden flower (tetraploid) 1	5.347
	CNS0095614	Golden flower (tetraploid) 2	8.672
	CNS0095615	Golden flower (tetraploid) 3	9.095
CRA001975	CRR073297	Stem 1	18.117
	CRR073298	Stem 2	19.091
	CRR073299	Stem 3	23.210
	CRR073300	Leaf 1	16.966
	CRR073301	Leaf 2	18.396
	CRR073302	Leaf 3	20.410
	CRR073303	Juvenile bud 1	20.536
	CRR073304	Juvenile bud 2	12.079
	CRR073305	Juvenile bud 3	24.685
	CRR073306	Third green 1	9.240
	CRR073307	Third green 2	9.428
	CRR073308	Third green 3	10.098
	CRR073309	Second white 1	13.612
	CRR073310	Second white 2	11.681
	CRR073311	Second white 3	10.225
	CRR073312	Silver flowering 1	10.310
	CRR073313	Silver flowering 2	10.058
	CRR073314	Silver flowering 3	6.695
	CRR073315	Gold flowering 1	10.621
	CRR073316	Gold flowering 2	13.477
	CRR073317	Gold flowering 3	8.866
	CRR073318	Tawny withering 1	14.844
	CRR073319	Tawny withering 2	13.700
	CRR073320	Tawny withering 3	14.132