Detail information of GWHGAAZE009780


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008235298.10PREDICTED: F-box protein SKIP17-like [Prunus mume]
Swissprottr|Q9SY03|FB219_ARATH3E-81F-box protein At4g02760
trEMBLtr|M5VIA3|M5VIA3_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ00854.1}
TAIR10AT4G02740.18E-64F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene117041985117049097-
GWHAAZE00000002mRNA117041985117049097-
GWHAAZE00000002exon117041985117042201-
GWHAAZE00000002exon117042304117042378-
GWHAAZE00000002exon117042465117042529-
GWHAAZE00000002exon117042653117042748-
GWHAAZE00000002exon117042825117042897-
GWHAAZE00000002exon117043013117043077-
GWHAAZE00000002exon117043604117043725-
GWHAAZE00000002exon117043803117043888-
GWHAAZE00000002exon117046689117046799-
GWHAAZE00000002exon117046888117047088-
GWHAAZE00000002exon117047574117047749-
GWHAAZE00000002exon117048735117049097-
GWHAAZE00000002CDS117048735117049097-
GWHAAZE00000002CDS117047574117047749-
GWHAAZE00000002CDS117046888117047088-
GWHAAZE00000002CDS117046689117046799-
GWHAAZE00000002CDS117043803117043888-
GWHAAZE00000002CDS117043604117043725-
GWHAAZE00000002CDS117043013117043077-
GWHAAZE00000002CDS117042825117042897-
GWHAAZE00000002CDS117042653117042748-
GWHAAZE00000002CDS117042465117042529-
GWHAAZE00000002CDS117042304117042378-
GWHAAZE00000002CDS117041985117042201-
Transcript Sequence

Network for GWHGAAZE009780

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like1141568.00E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.175
SRR3591706second leaf6.084
SRR3591707mature leaf7.486
SRR3591708Shoot apex8.840
SRR3591709Stem15.761
SRR3591710White floral bud12.255
SRR3591711White flower14.183
SRR3591712Green floral bud16.385
SRR3591713Yellow flower8.782
SRP173429 SRR8316895Juvenile bud stage 8.827
SRR8316896Juvenile bud stage 13.934
SRR8316897Juvenile bud stage 5.225
SRR8316894Third green stage 7.846
SRR8316900Third green stage 18.828
SRR8316901Third green stage 19.232
SRR8316898Complete white stage 5.773
SRR8316899Complete white stage 20.683
SRR8316903Complete white stage 12.069
SRR8316902Silver flowering stage5.461
SRR8316904Silver flowering stage8.510
SRR8316905Silver flowering stage4.631
SRR8316906Gold flowering stage 11.199
SRR8316907Gold flowering stage 10.274
SRR8316908Gold flowering stage 10.640
SRP132670SRR6706286Control18.632
SRR6706287Light intensity 50%17.200
SRR6706288Light intensity 20%18.338
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.036
CNS0095593Slightly white alabastrum(diploid) 213.117
CNS0095594Slightly white alabastrum(diploid) 312.523
CNS0095595Whole white alabastrum(diploid) 210.211
CNS0095596Whole white alabastrum(diploid) 311.791
CNS0095597Whole white alabastrum(diploid) 410.640
CNS0095598Silvery flower (diploied) 110.672
CNS0095599Silvery flower (diploied) 28.601
CNS0095600Silvery flower (diploied) 315.220
CNS0095601Golden flower (diploid) 19.342
CNS0095602Golden flower (diploid) 215.374
CNS0095603Golden flower (diploid) 313.892
CNS0095604Slightly white alabastrum(tetraploid) 19.596
CNS0095605Slightly white alabastrum(tetraploid) 28.518
CNS0095606Slightly white alabastrum(tetraploid) 312.178
CNS0095607Whole white alabastrum(tetraploid) 15.625
CNS0095608Whole white alabastrum(tetraploid) 26.134
CNS0095609Whole white alabastrum(tetraploid) 38.739
CNS0095610Silvery flower (tetraploid) 19.112
CNS0095611Silvery flower (tetraploid) 210.157
CNS0095612Silvery flower (tetraploid) 38.325
CNS0095613Golden flower (tetraploid) 14.543
CNS0095614Golden flower (tetraploid) 29.614
CNS0095615Golden flower (tetraploid) 35.962
CRA001975CRR073297Stem 122.354
CRR073298Stem 219.693
CRR073299Stem 319.074
CRR073300Leaf 121.911
CRR073301Leaf 219.638
CRR073302Leaf 317.407
CRR073303Juvenile bud 120.632
CRR073304Juvenile bud 215.787
CRR073305Juvenile bud 327.611
CRR073306Third green 15.725
CRR073307Third green 23.519
CRR073308Third green 35.854
CRR073309Second white 15.756
CRR073310Second white 25.752
CRR073311Second white 37.650
CRR073312Silver flowering 12.191
CRR073313Silver flowering 25.544
CRR073314Silver flowering 33.728
CRR073315Gold flowering 15.072
CRR073316Gold flowering 26.430
CRR073317Gold flowering 36.673
CRR073318Tawny withering 113.520
CRR073319Tawny withering 26.431
CRR073320Tawny withering 312.542