Gene detail

Detail information of GWHGAAZE009787

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP03632.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|B9DHT4\|ARIA_ARATH	ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBL	tr\|A0A068U5R7\|A0A068U5R7_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03632.1}
TAIR10	AT5G19330.1	ARM repeat protein interacting with ABF2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	117249684	117258229	+
GWHAAZE00000002	mRNA	117249684	117258229	+
GWHAAZE00000002	exon	117249684	117249930	+
GWHAAZE00000002	exon	117250079	117250239	+
GWHAAZE00000002	exon	117252356	117252528	+
GWHAAZE00000002	exon	117252606	117252726	+
GWHAAZE00000002	exon	117252808	117252882	+
GWHAAZE00000002	exon	117252985	117253079	+
GWHAAZE00000002	exon	117253640	117253715	+
GWHAAZE00000002	exon	117253794	117253901	+
GWHAAZE00000002	exon	117254345	117254473	+
GWHAAZE00000002	exon	117254571	117254639	+
GWHAAZE00000002	exon	117254819	117254878	+
GWHAAZE00000002	exon	117256295	117256418	+
GWHAAZE00000002	exon	117256548	117256687	+
GWHAAZE00000002	exon	117257005	117257068	+
GWHAAZE00000002	exon	117257226	117257305	+
GWHAAZE00000002	exon	117257412	117257476	+
GWHAAZE00000002	exon	117257580	117257697	+
GWHAAZE00000002	exon	117257784	117257962	+
GWHAAZE00000002	exon	117258130	117258229	+
GWHAAZE00000002	CDS	117249684	117249930	+
GWHAAZE00000002	CDS	117250079	117250239	+
GWHAAZE00000002	CDS	117252356	117252528	+
GWHAAZE00000002	CDS	117252606	117252726	+
GWHAAZE00000002	CDS	117252808	117252882	+
GWHAAZE00000002	CDS	117252985	117253079	+
GWHAAZE00000002	CDS	117253640	117253715	+
GWHAAZE00000002	CDS	117253794	117253901	+
GWHAAZE00000002	CDS	117254345	117254473	+
GWHAAZE00000002	CDS	117254571	117254639	+
GWHAAZE00000002	CDS	117254819	117254878	+
GWHAAZE00000002	CDS	117256295	117256418	+
GWHAAZE00000002	CDS	117256548	117256687	+
GWHAAZE00000002	CDS	117257005	117257068	+
GWHAAZE00000002	CDS	117257226	117257305	+
GWHAAZE00000002	CDS	117257412	117257476	+
GWHAAZE00000002	CDS	117257580	117257697	+
GWHAAZE00000002	CDS	117257784	117257962	+
GWHAAZE00000002	CDS	117258130	117258229	+

Transcript Sequence
>GWHTAAZE009799 ATGGGAAACCAAAAGCATCATGAGCAACCGACCAACTCCGCGAGAAGAAGCCTAAAGCGAAAGCTCGAAGTGGATTTCGAAGAAGATCGCAAGATCGTTTCTCTATTATCCCACGATGCTCATCAAGATCTCGTTCGCGAGGTTAAGGAGCAGGTGGAAATCCTCGATTCTGTTTTCTCATCGACCGAAGCAGATCGAGCATCGGCAAAGCATTCAATTCATGTTCTATCTGAACTCGCTAAGAACGAGGATATTGTGAACGTGATTGTTGATTCGGGGGCAGTGCCGGCTCTCGTTCGGCATCTCGAGGCTCCACCCCAGTCGAGAGAAATAGAGAGCGCTTTAAGGCCATACGAGCATGAAGTTGAAAAAGGAAGCGCTTTCACTCTCGGACTTCTCGCCGTAAAACCAGAGCATCAACAACTTATTGTTGATGCTGGAGCTCTGCCCCGCCTTGTGGATCTGTTAAAGAGGTACAGAGATGGCCAAAACTCTCGAGCAGTCAATGGTGTTATAAGGAGAGCAGCTGATGCAATCACCAACCTTGCACATGAGAATAGCAGCATTAAAACCCGTGTTAGGCTTGAAGGTGGGATCCCGCCCCTTGTTGAGTTGCTTGAGTTCACTGACTCAAAGGTTCAGAGAGCAGCTGCAGGGGCCCTGCGAACTCTTGCCTTTAAAAATGATGAAAACAAAAATCAGATTGTGGAATGTAATGCTCTGCCTACTCTTATTCTAATGCTTCGATTTGAGGATGCTGCCATACACTATGAAGCGGTTGGTGTGATTGGGAACCTGGTCCACTCATCGCCGAACATCAAAAAGGAAGTTCTTGCTGCTGGAGCTCTGCAGCCTGTAATTGGGTTACTTAGTTCCAGCTGCTCAGAGAGCCAAAGAGAAGCTGCTTTACTACTTGGGCAATTTGCTGCCACTGATACAGATAGCAAGGTTCACATTGTTCAAAGAGGTGCTGTGGGTCCATTAATTGAGATGCTTCAGTCTCCAGATGCTCAACTAAGAGAGATGTCAGCTTTTGCACTGGGGAGGTTGGCACAGGATCCACACAACCAAGCTGGCATTGCACATAGCGGGGGTTTGTTACCATTACTGAAGCTTCTTGATTCAAAAAATGGATCCCTGCAACATAATGCTGCGTTTGCTCTTTATGGTCTTGCAGATAATGAGGATAATGTTGCAGATCTTATCAGTGTCGGAGGTGTTCAGAAACTTCAGGACGGGGAATTCATTGTCCAACCAACGAGAGATTGTGTGGCCAAGACACTGAAAAGATTGGAGGAGAAGATTCATGGTCGAGTATTAAGCCATCTGTTGTACTTAATGAGGGTTGCTGAAAAAGTTGTTCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCACCCGAGGATCAAAAAGCAATTTTTATAGATAGCAATGGACTAGAGTTGCTTCTGGAGCTTCTCGAATTAACAAATTTGAAGCACCAGCGAGATGGTTCAGTTGCTTTGTTTAAGTTGGCTGAGAAAGCCAGCTCACTTTCTCCTGTTGATGCTGGTCCTCCATCCCCAATCTCTCAGGTGTATTTGGGTGAGAAGTATGTGAACAATCCTACACTCTCGGATGTTACCTTCTTAGTTGAAGGTAAACGGTTCTATGCTCACCGAATTTGCCTGCTTGCTTCTTCTGATGCATTTCGAGCAATGTTTGATGGTGGTTACAGGGAAAAGGATGCAAAGGACATTGAGATTCCAAATATTAAATGGGAAGTATTCGAGTTGATGATGAGATACATATACACAGGTTCGGTCGACGTCAACTTGGATATTGCTCAGGATCTTCTGAGAGCTGCTGATCAATATCTTTTGGAGGGGCTTAAACGTCTATGCGAGTATGCCATTGCACAGGATATAACAATGGAAAATGTTTCACTTATGTACGAGTTATCAGATGCCTTCAATGCTATGTCATTGAGGCATGCTTGCATTCTTTTTGTTTTGGAGAAGTTTGACAAATTGACAGCTATGCCATGGTATGTTCAATTTCTTACTCCCCCTTTTACTATACCCCCACCCCTAGCAAAAAGGTATCATCATCTAATACAAAGGATCTTGCCGGAGATGCGGGTTTACTTTGTAAGAGCGCTAACTAATAGACTGCCAATCCAAGCCGAGTTGGGGCTATAG

Network for GWHGAAZE009787

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00514.24	Arm	137	183	0.00013
PF00514.24	Arm	197	225	1.70E-06
PF00514.24	Arm	228	267	9.80E-06
PF00651.32	BTB	533	635	2.10E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.566
	SRR3591706	second leaf	14.164
	SRR3591707	mature leaf	8.520
	SRR3591708	Shoot apex	25.315
	SRR3591709	Stem	20.907
	SRR3591710	White floral bud	15.011
	SRR3591711	White flower	14.165
	SRR3591712	Green floral bud	15.653
	SRR3591713	Yellow flower	17.054
SRP173429	SRR8316895	Juvenile bud stage	15.514
	SRR8316896	Juvenile bud stage	20.095
	SRR8316897	Juvenile bud stage	9.200
	SRR8316894	Third green stage	6.406
	SRR8316900	Third green stage	16.343
	SRR8316901	Third green stage	19.052
	SRR8316898	Complete white stage	10.767
	SRR8316899	Complete white stage	25.011
	SRR8316903	Complete white stage	16.365
	SRR8316902	Silver flowering stage	7.468
	SRR8316904	Silver flowering stage	9.471
	SRR8316905	Silver flowering stage	4.355
	SRR8316906	Gold flowering stage	16.085
	SRR8316907	Gold flowering stage	15.355
	SRR8316908	Gold flowering stage	13.880
SRP132670	SRR6706286	Control	14.608
	SRR6706287	Light intensity 50%	17.564
	SRR6706288	Light intensity 20%	18.879
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.372
	CNS0095593	Slightly white alabastrum(diploid) 2	16.611
	CNS0095594	Slightly white alabastrum(diploid) 3	18.600
	CNS0095595	Whole white alabastrum(diploid) 2	17.005
	CNS0095596	Whole white alabastrum(diploid) 3	8.660
	CNS0095597	Whole white alabastrum(diploid) 4	13.481
	CNS0095598	Silvery flower (diploied) 1	12.027
	CNS0095599	Silvery flower (diploied) 2	16.821
	CNS0095600	Silvery flower (diploied) 3	20.255
	CNS0095601	Golden flower (diploid) 1	12.715
	CNS0095602	Golden flower (diploid) 2	19.232
	CNS0095603	Golden flower (diploid) 3	19.084
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.353
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.607
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.792
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.372
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.846
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.575
	CNS0095610	Silvery flower (tetraploid) 1	16.659
	CNS0095611	Silvery flower (tetraploid) 2	14.314
	CNS0095612	Silvery flower (tetraploid) 3	15.010
	CNS0095613	Golden flower (tetraploid) 1	7.755
	CNS0095614	Golden flower (tetraploid) 2	13.486
	CNS0095615	Golden flower (tetraploid) 3	13.700
CRA001975	CRR073297	Stem 1	17.171
	CRR073298	Stem 2	15.708
	CRR073299	Stem 3	14.984
	CRR073300	Leaf 1	20.387
	CRR073301	Leaf 2	17.413
	CRR073302	Leaf 3	14.964
	CRR073303	Juvenile bud 1	16.491
	CRR073304	Juvenile bud 2	15.311
	CRR073305	Juvenile bud 3	17.590
	CRR073306	Third green 1	8.020
	CRR073307	Third green 2	8.792
	CRR073308	Third green 3	8.215
	CRR073309	Second white 1	8.880
	CRR073310	Second white 2	8.199
	CRR073311	Second white 3	7.542
	CRR073312	Silver flowering 1	8.212
	CRR073313	Silver flowering 2	9.552
	CRR073314	Silver flowering 3	9.468
	CRR073315	Gold flowering 1	3.712
	CRR073316	Gold flowering 2	8.724
	CRR073317	Gold flowering 3	3.721
	CRR073318	Tawny withering 1	26.465
	CRR073319	Tawny withering 2	29.986
	CRR073320	Tawny withering 3	28.020