Gene detail

Detail information of GWHGAAZE009812

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010090372.1	5.96907E-73	putative glutathione peroxidase 4 [Morus notabilis]
Swissprot	tr\|Q8L910\|GPX4_ARATH	2E-63	Probable glutathione peroxidase 4
trEMBL	tr\|W9QT41\|W9QT41_9ROSA	2E-73	Glutathione peroxidase {ECO:0000256\|RuleBase:RU000499}
TAIR10	AT2G48150.1	7E-51	glutathione peroxidase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	117710999	117715038	-
GWHAAZE00000002	mRNA	117710999	117715038	-
GWHAAZE00000002	exon	117714979	117715038	-
GWHAAZE00000002	exon	117714717	117714825	-
GWHAAZE00000002	exon	117713825	117713943	-
GWHAAZE00000002	exon	117711138	117711308	-
GWHAAZE00000002	exon	117710999	117711028	-
GWHAAZE00000002	CDS	117714979	117715038	-
GWHAAZE00000002	CDS	117714717	117714825	-
GWHAAZE00000002	CDS	117713825	117713943	-
GWHAAZE00000002	CDS	117711138	117711308	-
GWHAAZE00000002	CDS	117710999	117711028	-

Transcript Sequence
>GWHTAAZE009824 ATGGGTAATTCGTCATCAATCCCCCAAAATCAAAAATCAATCCATGGATTCACCGTCAAGGATTCCAAGAATCGCGAGGTGGACCTCAGCAATTACAAAGGGAAAGTCCTTCTTATCGTCAATGTTGCTTCCAAATGGTTCTCTATCGATCTTTTCCCTAATTTTAATGATTTTGAGATCTTGGCATTCCCGTGCAATCAATTCTTGAAGCAAGAGCCTGGTACTATAGAGGAGGTTCAAGAATATGCCTGTACAATGTATAGCGCTGATTTTCCTATCTTCCAAAAGGTAAATGTGAATGGATCAGATGTGGCGCCTGTATACAAGTTCCTCAAAGCAAGTAAAACTGGATTTCTTGGTTCTACTAGCATCAAATGGAATTTCACTAAGTTCCTGGTTGATAAGGAAGGGCAAGTTATCTCCCGTTATGGAACTACCACCTTGCCGTTTTCTATTGAGGGAGACATCAAGAAAGCATTGGGACTATGA

Network for GWHGAAZE009812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00255.20	GSHPx	14	112	5.20E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00432	gpx, btuE, bsaA	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Glutathione metabolism	map00480
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004602	molecular_function	glutathione peroxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.499
	SRR3591706	second leaf	0.419
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.329
	SRR3591709	Stem	1.561
	SRR3591710	White floral bud	14.675
	SRR3591711	White flower	5.701
	SRR3591712	Green floral bud	11.398
	SRR3591713	Yellow flower	3.323
SRP173429	SRR8316895	Juvenile bud stage	2.545
	SRR8316896	Juvenile bud stage	5.927
	SRR8316897	Juvenile bud stage	3.407
	SRR8316894	Third green stage	3.212
	SRR8316900	Third green stage	13.065
	SRR8316901	Third green stage	12.069
	SRR8316898	Complete white stage	0.852
	SRR8316899	Complete white stage	0.613
	SRR8316903	Complete white stage	1.801
	SRR8316902	Silver flowering stage	0.226
	SRR8316904	Silver flowering stage	0.447
	SRR8316905	Silver flowering stage	0.153
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.482
SRP132670	SRR6706286	Control	0.695
	SRR6706287	Light intensity 50%	0.567
	SRR6706288	Light intensity 20%	0.939
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.879
	CNS0095593	Slightly white alabastrum(diploid) 2	6.761
	CNS0095594	Slightly white alabastrum(diploid) 3	11.430
	CNS0095595	Whole white alabastrum(diploid) 2	11.320
	CNS0095596	Whole white alabastrum(diploid) 3	27.902
	CNS0095597	Whole white alabastrum(diploid) 4	11.998
	CNS0095598	Silvery flower (diploied) 1	0.446
	CNS0095599	Silvery flower (diploied) 2	3.280
	CNS0095600	Silvery flower (diploied) 3	0.757
	CNS0095601	Golden flower (diploid) 1	0.421
	CNS0095602	Golden flower (diploid) 2	0.522
	CNS0095603	Golden flower (diploid) 3	0.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.801
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.352
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.419
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.660
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.885
	CNS0095612	Silvery flower (tetraploid) 3	1.387
	CNS0095613	Golden flower (tetraploid) 1	0.763
	CNS0095614	Golden flower (tetraploid) 2	0.002
	CNS0095615	Golden flower (tetraploid) 3	0.523
CRA001975	CRR073297	Stem 1	0.472
	CRR073298	Stem 2	0.320
	CRR073299	Stem 3	0.340
	CRR073300	Leaf 1	0.777
	CRR073301	Leaf 2	0.882
	CRR073302	Leaf 3	0.662
	CRR073303	Juvenile bud 1	1.675
	CRR073304	Juvenile bud 2	0.762
	CRR073305	Juvenile bud 3	0.374
	CRR073306	Third green 1	0.187
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.168
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.547
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.034
	CRR073316	Gold flowering 2	0.067
	CRR073317	Gold flowering 3	0.414
	CRR073318	Tawny withering 1	1.108
	CRR073319	Tawny withering 2	0.152
	CRR073320	Tawny withering 3	0.720