Gene detail

Detail information of GWHGAAZE009816

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006355876.1	PREDICTED: isoamylase 2, chloroplastic [Solanum tuberosum]
Swissprot	tr\|Q8L735\|ISOA2_ARATH	Isoamylase 2, chloroplastic (Precursor)
trEMBL	tr\|M0ZK80\|M0ZK80_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400002502}
TAIR10	AT1G03310.2	debranching enzyme 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	117787307	117789715	+
GWHAAZE00000002	mRNA	117787307	117789715	+
GWHAAZE00000002	exon	117787307	117789715	+
GWHAAZE00000002	CDS	117787307	117789715	+

Transcript Sequence
>GWHTAAZE009828 ATGAATAGCAGCTTGAAAGTATTGGCTACTGCACGTTTTTCCGCTGTTCAAACTGCAACAGAGGTCTCAACTTATTTATTTAAGTCAGAAATTGGCAGTCAGGTGAAAGTATTTGTTGAAAAGAAAATTGACAAGTATGGAGTGACTGTTGAGGTTTCCCCCTTGCAAACTGTGGGTGGTGAGGAAGAGCTGGTAATGACTTGGGGAATATTCAGGTCAGATTCATCATCTTTTTTGCCTCTGGATTATCAAAATTCAGGTTTAGATAGCAAATCCAGGACCATCGATTCTCGATTTGTGCAGAAGTCTTTTGACAAACACACAGTTGAGTTAGATTTTGAAGCAAGTTTAACCCCCTTCAGTATTTCATTTCTGCTGAAGTCTTCATTGGAAGGTGATTCAAAAATCTCAGAAATCAGAAGCCAGAGGAAGACAAGTTTTTGCGTACCCGTTGGTTTCAGTAGAGGGTATCCTGCTCCATTGGGTCTGTCCTTTTCATCTGATGATTCTATGAATTTCGCTCTGTTCTCAAGAAGTGCAGAAGGTGTAGTTCTGTGTTTGTATGACAATACCACCAAAAATAAACCTGCTCTAGAGATTGAGCTAGATCCATATGTCAATCGATCAGGTGACATCTGGCATGCCTCGATAGACAGCGACCTACCCTTAGTGGGCTATGGTTATCGATGCAAGAGAATTGCTCAGGAAAAAGTAGACAGTCATCACGCAGATCAGGTTCTTTTGGACCCCTATGCTAAGGTGATTGGAGATTACTTTCTTCAAGGTCTTGGGCAATTGTGCATGGAACCTGCTTTTGATTGGAGTGGTGATATTCCACCTTGCTTGCCAATGGAGGAACTTGTCGTCTATCGGTTAAACGTGATGCATTTTACAAAAGATAAGTCTAGCAAGTTACCTGGTGACAGTGCAGGTACCTTCTCCGGTATTGCTGAGAAGTTGCATCATTTTCAGGATCTTGGTGTTAATGCAGTCTTATTAGAGCCAGTTTTCCCTTTTGATGAGCAGAAAGGACCCTATTTCCCTTGTCATTTCTTTTCACCAACAAGCCTATACGGGTCTTCTGCTAGCTCTTTGTCAGCTATCAAGCTAATGAAGGAGATGGTGAAGAGATTGCATGCCAGTGGGATAGAGGTTCTTCTGGAAGTTGTATATACTCACACTGCTGAGGGCGGGGCACTGAGAGGAATTGATGACCCATCATATTATTACGAAGAGGGCAAGGGTTTAGGTATTAGTGATACTTTAAAGTGCAACTACCCCATTGTCCAACAGATGATTTTGGATAGTCTTAGGCATTGGGTGATTGAGTTTCGTGTTGATGGGTTTTGTTTTATAAATTCCTATTCTCTGTTGAGGGGGGTCCATGGTGAGAATCTCTCTCGCCCTCCTTTGGTTGAAGCAATTTCTTTCGATCCCATCCTCTCAAAGGTGAAGATCATTGCGGATTATTTTGATCCGCGTGACATGCCATCGAAGGAAATCCAGTTTCCTCATTGGAAGAGGTGGGCAGAAATAAATACAAAGTTTTGTGAAGATGTGAGAAACTATTTGAGAGGCGAGGGTCTTCTTAGCAACCTTGCAACACGGCTTTGTGGAAGTGGAGATATCTTCTTGGCTGGTCGAGGCCCCGCATTCTCTTTCAATTTCATTGCCAGAAATTTTGGACTTCCTCTTGTTGATTTAGTCAGCTTCAGTAACAGTGAGCTCACCTCACAATTAAGTTGGAATTGTGGTGAAGAAGGTGCCACTAATAATACTGAGGTCCTTGAAACACGACTGAAACAAATTCGGAATTTTCTGTTCATCTTGTTTGTTTCTCTGGGTGTTCCTGTCCTTAATATGGGAGACGAGTGTGGTCAATCTTCTGGGGGATCACTCGAGTGTGACCGCAAGCCTTTCAATTGGGATGCTCTAAGAACTGGCTTTGCTACTCAAACCATGCAGTTCATTTCATTTTTGAGTTCGCTGAGAATAAAGCGAAGGGATCTTCTTCAAAAGAGGAACTACTTGAAGGTAGAGAGTATCGATTGGCATGGAAGGGACGACTCTCCCCCTAGTTGGGAAGACCCGACGAGCAAATTTTTAGCCATGACATTGAAAGCGGACAAAGAAGAAGTCATGTTAGGGGCTGGATCTTCTTGTCCAAAAGGTGACTTGTTTGTGGCTTTCAACGCTGCTGAGGAGCCGGAAATTGTTACTCTGCCAGCACCTCCAGCAGAAATGGTGTGGCTTCGTTTGGTCGATACGGCTCTTCCTTATCCCAGATTTTTCTCCGTGGATGGCGAAGCAGTAGCTGAGGAGATGCCTGAAATGGTAACGTACGAGATGAAATCTCACAGTTGTGTTCTGTTTGAAGCCAGGTACATCAGTGTTTTGAAATCTGAATAA

Network for GWHGAAZE009816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02922.19	CBM_48	160	252	2.30E-14
PF00128.25	Alpha-amylase	311	396	8.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01214	ISA, treX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.633
	SRR3591706	second leaf	7.678
	SRR3591707	mature leaf	7.975
	SRR3591708	Shoot apex	8.916
	SRR3591709	Stem	8.161
	SRR3591710	White floral bud	11.081
	SRR3591711	White flower	12.937
	SRR3591712	Green floral bud	14.669
	SRR3591713	Yellow flower	9.334
SRP173429	SRR8316895	Juvenile bud stage	7.250
	SRR8316896	Juvenile bud stage	7.563
	SRR8316897	Juvenile bud stage	4.719
	SRR8316894	Third green stage	2.999
	SRR8316900	Third green stage	8.291
	SRR8316901	Third green stage	7.286
	SRR8316898	Complete white stage	5.017
	SRR8316899	Complete white stage	12.707
	SRR8316903	Complete white stage	5.820
	SRR8316902	Silver flowering stage	4.412
	SRR8316904	Silver flowering stage	7.318
	SRR8316905	Silver flowering stage	3.648
	SRR8316906	Gold flowering stage	10.321
	SRR8316907	Gold flowering stage	8.901
	SRR8316908	Gold flowering stage	9.008
SRP132670	SRR6706286	Control	4.070
	SRR6706287	Light intensity 50%	4.335
	SRR6706288	Light intensity 20%	4.858
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.863
	CNS0095593	Slightly white alabastrum(diploid) 2	4.411
	CNS0095594	Slightly white alabastrum(diploid) 3	5.400
	CNS0095595	Whole white alabastrum(diploid) 2	4.782
	CNS0095596	Whole white alabastrum(diploid) 3	5.779
	CNS0095597	Whole white alabastrum(diploid) 4	3.881
	CNS0095598	Silvery flower (diploied) 1	6.150
	CNS0095599	Silvery flower (diploied) 2	5.798
	CNS0095600	Silvery flower (diploied) 3	13.231
	CNS0095601	Golden flower (diploid) 1	5.255
	CNS0095602	Golden flower (diploid) 2	13.074
	CNS0095603	Golden flower (diploid) 3	14.622
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.191
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.770
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.371
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.855
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.824
	CNS0095610	Silvery flower (tetraploid) 1	12.138
	CNS0095611	Silvery flower (tetraploid) 2	14.584
	CNS0095612	Silvery flower (tetraploid) 3	12.157
	CNS0095613	Golden flower (tetraploid) 1	4.147
	CNS0095614	Golden flower (tetraploid) 2	9.364
	CNS0095615	Golden flower (tetraploid) 3	4.816
CRA001975	CRR073297	Stem 1	12.548
	CRR073298	Stem 2	10.405
	CRR073299	Stem 3	13.139
	CRR073300	Leaf 1	9.208
	CRR073301	Leaf 2	7.802
	CRR073302	Leaf 3	7.639
	CRR073303	Juvenile bud 1	9.692
	CRR073304	Juvenile bud 2	9.466
	CRR073305	Juvenile bud 3	13.156
	CRR073306	Third green 1	5.615
	CRR073307	Third green 2	5.666
	CRR073308	Third green 3	5.281
	CRR073309	Second white 1	12.536
	CRR073310	Second white 2	6.235
	CRR073311	Second white 3	6.298
	CRR073312	Silver flowering 1	5.585
	CRR073313	Silver flowering 2	6.184
	CRR073314	Silver flowering 3	4.472
	CRR073315	Gold flowering 1	16.644
	CRR073316	Gold flowering 2	21.477
	CRR073317	Gold flowering 3	18.561
	CRR073318	Tawny withering 1	9.912
	CRR073319	Tawny withering 2	7.107
	CRR073320	Tawny withering 3	7.418