Detail information of GWHGAAZE009823


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009775027.10PREDICTED: elongation factor Tu, mitochondrial [Nicotiana sylvestris]
Swissprottr|Q9ZT91|EFTM_ARATH0Elongation factor Tu, mitochondrial (Precursor)
trEMBLtr|K4CUX6|K4CUX6_SOLLC0Elongation factor Tu {ECO:0000256|RuleBase:RU004061}
TAIR10AT4G02930.10GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene117935063117944320-
GWHAAZE00000002mRNA117935063117944320-
GWHAAZE00000002exon117935063117935480-
GWHAAZE00000002exon117936787117937027-
GWHAAZE00000002exon117937847117937909-
GWHAAZE00000002exon117937989117938051-
GWHAAZE00000002exon117938142117938225-
GWHAAZE00000002exon117938536117938741-
GWHAAZE00000002exon117939637117939727-
GWHAAZE00000002exon117940256117940360-
GWHAAZE00000002exon117940953117941027-
GWHAAZE00000002exon117941339117941431-
GWHAAZE00000002exon117941595117941670-
GWHAAZE00000002exon117944118117944320-
GWHAAZE00000002five_prime_UTR117944300117944320-
GWHAAZE00000002CDS117944118117944299-
GWHAAZE00000002CDS117941595117941670-
GWHAAZE00000002CDS117941339117941431-
GWHAAZE00000002CDS117940953117941027-
GWHAAZE00000002CDS117940256117940360-
GWHAAZE00000002CDS117939637117939727-
GWHAAZE00000002CDS117938536117938741-
GWHAAZE00000002CDS117938142117938225-
GWHAAZE00000002CDS117937989117938051-
GWHAAZE00000002CDS117937847117937909-
GWHAAZE00000002CDS117936787117937027-
GWHAAZE00000002CDS117935410117935480-
GWHAAZE00000002three_prime_UTR117935063117935409-
Transcript Sequence

Network for GWHGAAZE009823

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU622555.00E-56
PF03144.26GTP_EFTU_D22793481.30E-15
PF03143.18GTP_EFTU_D33534476.70E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02358tuf, TUFM Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0006414biological_processtranslational elongation
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity
GO:0003746molecular_functiontranslation elongation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.178
SRR3591706second leaf7.579
SRR3591707mature leaf7.705
SRR3591708Shoot apex34.062
SRR3591709Stem11.698
SRR3591710White floral bud10.496
SRR3591711White flower19.608
SRR3591712Green floral bud22.170
SRR3591713Yellow flower10.855
SRP173429 SRR8316895Juvenile bud stage 21.301
SRR8316896Juvenile bud stage 28.053
SRR8316897Juvenile bud stage 10.850
SRR8316894Third green stage 12.067
SRR8316900Third green stage 29.878
SRR8316901Third green stage 24.430
SRR8316898Complete white stage 3.745
SRR8316899Complete white stage 22.974
SRR8316903Complete white stage 6.546
SRR8316902Silver flowering stage4.362
SRR8316904Silver flowering stage5.089
SRR8316905Silver flowering stage1.774
SRR8316906Gold flowering stage 6.633
SRR8316907Gold flowering stage 7.221
SRR8316908Gold flowering stage 8.257
SRP132670SRR6706286Control34.890
SRR6706287Light intensity 50%36.471
SRR6706288Light intensity 20%41.227
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.907
CNS0095593Slightly white alabastrum(diploid) 233.460
CNS0095594Slightly white alabastrum(diploid) 330.084
CNS0095595Whole white alabastrum(diploid) 226.189
CNS0095596Whole white alabastrum(diploid) 326.993
CNS0095597Whole white alabastrum(diploid) 418.355
CNS0095598Silvery flower (diploied) 116.193
CNS0095599Silvery flower (diploied) 214.246
CNS0095600Silvery flower (diploied) 39.000
CNS0095601Golden flower (diploid) 113.010
CNS0095602Golden flower (diploid) 28.459
CNS0095603Golden flower (diploid) 38.217
CNS0095604Slightly white alabastrum(tetraploid) 125.182
CNS0095605Slightly white alabastrum(tetraploid) 226.105
CNS0095606Slightly white alabastrum(tetraploid) 336.255
CNS0095607Whole white alabastrum(tetraploid) 110.514
CNS0095608Whole white alabastrum(tetraploid) 210.911
CNS0095609Whole white alabastrum(tetraploid) 326.807
CNS0095610Silvery flower (tetraploid) 115.766
CNS0095611Silvery flower (tetraploid) 213.064
CNS0095612Silvery flower (tetraploid) 38.239
CNS0095613Golden flower (tetraploid) 16.669
CNS0095614Golden flower (tetraploid) 212.231
CNS0095615Golden flower (tetraploid) 34.004
CRA001975CRR073297Stem 142.550
CRR073298Stem 235.886
CRR073299Stem 339.482
CRR073300Leaf 135.276
CRR073301Leaf 233.765
CRR073302Leaf 340.356
CRR073303Juvenile bud 138.367
CRR073304Juvenile bud 222.295
CRR073305Juvenile bud 332.937
CRR073306Third green 12.877
CRR073307Third green 21.484
CRR073308Third green 32.632
CRR073309Second white 17.444
CRR073310Second white 24.084
CRR073311Second white 34.210
CRR073312Silver flowering 12.706
CRR073313Silver flowering 25.985
CRR073314Silver flowering 33.027
CRR073315Gold flowering 112.099
CRR073316Gold flowering 224.007
CRR073317Gold flowering 317.511
CRR073318Tawny withering 123.084
CRR073319Tawny withering 218.087
CRR073320Tawny withering 327.731