Gene detail

Detail information of GWHGAAZE009825

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002321058.2	6.05625E-65	hypothetical protein POPTR_0014s13410g [Populus trichocarpa]
Swissprot	tr\|Q7XI08\|XB34_ORYSJ	7E-10	Probable E3 ubiquitin-protein ligase XBOS34
trEMBL	tr\|B9IA12\|B9IA12_POPTR	2E-65	Uncharacterized protein {ECO:0000313\|EMBL:EEE99373.2}
TAIR10	AT1G63900.1	8E-38	E3 Ubiquitin ligase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	117984854	117988174	+
GWHAAZE00000002	mRNA	117984854	117988174	+
GWHAAZE00000002	exon	117984854	117984872	+
GWHAAZE00000002	exon	117985261	117985391	+
GWHAAZE00000002	exon	117985481	117985569	+
GWHAAZE00000002	exon	117985780	117985882	+
GWHAAZE00000002	exon	117985987	117986075	+
GWHAAZE00000002	exon	117987081	117987124	+
GWHAAZE00000002	exon	117987198	117987306	+
GWHAAZE00000002	exon	117988072	117988174	+
GWHAAZE00000002	CDS	117984854	117984872	+
GWHAAZE00000002	CDS	117985261	117985391	+
GWHAAZE00000002	CDS	117985481	117985569	+
GWHAAZE00000002	CDS	117985780	117985882	+
GWHAAZE00000002	CDS	117985987	117986075	+
GWHAAZE00000002	CDS	117987081	117987124	+
GWHAAZE00000002	CDS	117987198	117987306	+
GWHAAZE00000002	CDS	117988072	117988174	+

Transcript Sequence
>GWHTAAZE009837 ATGATTGACGAGCCAAAAGCTGAGTCTGAGTTACTAGATACTGCAAGCAAAGTGTTACCTTTGGTTGTCACCATATCAGGAACAGTCAACTCAGATACTCCAATCAGCTGTGAGCATAGTGGTCTGAGAGATGTGATTGTGGAGCAAACGGCAGAGCAACACTTCTTGAAACACAGTGATGCTGGTTCGTGGATACAGGACTCTGCTTTGTTGCAATCCAACTGTAATGAGGTTCCCTGCCCGAGGTGCTTCAGGTTTGTTATTACAGTTGGAAGTGAGGTGTTTGAAGGGTCAGGAGGATCCCTTGTACGTGGAACCTTAGACTATCTCCAAAGTCTCAAGGTGCTGGGAGTCAAGAGAATCGAACGCGTTCTTCCAACTGGTGCCCCATTGACTGTTGTTGGCGAGGTAAAGTGTCTTGGTTGGTTAATGGTTCTTGATGCTGCAGCTAAAAGACGAGGGTCAGACAATGAAGGTTCAAATGGTAAAGTTCAAAGTGGATATGATGCTCCTAAAAAGGATAGGTTAATGCCAGATTTATGTGTGATATGCCTTGAGCAGGAGTACAATTCAGTTCTTGTCCCGTGTGGTCATATGTGCAGTTGTATAGGGTGCTCCTTGCACTTGACAAGCTGTCCACTTTGTCGTCGACATATTGATCAGGTAGTGAAGACATTTCGCCATTGA

Network for GWHGAAZE009825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12483.9	GIDE	89	137	1.10E-06
PF13920.7	zf-C3HC4_3	179	222	8.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006996	biological_process	organelle organization
GO:0016567	biological_process	protein ubiquitination
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.111
	SRR3591706	second leaf	1.099
	SRR3591707	mature leaf	0.623
	SRR3591708	Shoot apex	0.956
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.605
	SRR3591711	White flower	1.166
	SRR3591712	Green floral bud	3.070
	SRR3591713	Yellow flower	1.239
SRP173429	SRR8316895	Juvenile bud stage	1.070
	SRR8316896	Juvenile bud stage	2.210
	SRR8316897	Juvenile bud stage	0.610
	SRR8316894	Third green stage	1.291
	SRR8316900	Third green stage	2.605
	SRR8316901	Third green stage	2.774
	SRR8316898	Complete white stage	0.636
	SRR8316899	Complete white stage	0.992
	SRR8316903	Complete white stage	0.171
	SRR8316902	Silver flowering stage	0.541
	SRR8316904	Silver flowering stage	0.664
	SRR8316905	Silver flowering stage	0.329
	SRR8316906	Gold flowering stage	1.529
	SRR8316907	Gold flowering stage	2.093
	SRR8316908	Gold flowering stage	0.491
SRP132670	SRR6706286	Control	1.368
	SRR6706287	Light intensity 50%	1.331
	SRR6706288	Light intensity 20%	1.133
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.364
	CNS0095593	Slightly white alabastrum(diploid) 2	3.483
	CNS0095594	Slightly white alabastrum(diploid) 3	3.796
	CNS0095595	Whole white alabastrum(diploid) 2	4.820
	CNS0095596	Whole white alabastrum(diploid) 3	4.661
	CNS0095597	Whole white alabastrum(diploid) 4	4.645
	CNS0095598	Silvery flower (diploied) 1	1.492
	CNS0095599	Silvery flower (diploied) 2	1.704
	CNS0095600	Silvery flower (diploied) 3	0.454
	CNS0095601	Golden flower (diploid) 1	0.588
	CNS0095602	Golden flower (diploid) 2	0.756
	CNS0095603	Golden flower (diploid) 3	0.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.897
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.166
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.729
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.969
	CNS0095610	Silvery flower (tetraploid) 1	1.960
	CNS0095611	Silvery flower (tetraploid) 2	1.395
	CNS0095612	Silvery flower (tetraploid) 3	1.235
	CNS0095613	Golden flower (tetraploid) 1	0.913
	CNS0095614	Golden flower (tetraploid) 2	0.856
	CNS0095615	Golden flower (tetraploid) 3	0.554
CRA001975	CRR073297	Stem 1	3.210
	CRR073298	Stem 2	2.754
	CRR073299	Stem 3	2.129
	CRR073300	Leaf 1	3.786
	CRR073301	Leaf 2	2.412
	CRR073302	Leaf 3	1.816
	CRR073303	Juvenile bud 1	1.146
	CRR073304	Juvenile bud 2	0.850
	CRR073305	Juvenile bud 3	0.723
	CRR073306	Third green 1	0.575
	CRR073307	Third green 2	0.294
	CRR073308	Third green 3	0.374
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.613
	CRR073311	Second white 3	0.247
	CRR073312	Silver flowering 1	0.177
	CRR073313	Silver flowering 2	0.027
	CRR073314	Silver flowering 3	0.600
	CRR073315	Gold flowering 1	2.984
	CRR073316	Gold flowering 2	2.755
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.514
	CRR073319	Tawny withering 2	0.736
	CRR073320	Tawny withering 3	0.454