Gene detail

Detail information of GWHGAAZE009833

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03583.1	9.8736E-151	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8H1D6\|RBK1_ARATH	1E-81	Receptor-like cytosolic serine/threonine-protein kinase RBK1
trEMBL	tr\|A0A068U7J2\|A0A068U7J2_COFCA	4E-151	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03583.1}
TAIR10	AT5G35960.1	6E-82	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	118153490	118155643	+
GWHAAZE00000002	mRNA	118153490	118155643	+
GWHAAZE00000002	exon	118153490	118153829	+
GWHAAZE00000002	exon	118153915	118154166	+
GWHAAZE00000002	exon	118154742	118154802	+
GWHAAZE00000002	exon	118154897	118155032	+
GWHAAZE00000002	exon	118155107	118155271	+
GWHAAZE00000002	exon	118155524	118155643	+
GWHAAZE00000002	CDS	118153490	118153829	+
GWHAAZE00000002	CDS	118153915	118154166	+
GWHAAZE00000002	CDS	118154742	118154802	+
GWHAAZE00000002	CDS	118154897	118155032	+
GWHAAZE00000002	CDS	118155107	118155271	+
GWHAAZE00000002	CDS	118155524	118155643	+

Transcript Sequence
>GWHTAAZE009845 ATGGAGAGTGAGAAGGAAGATGTGTACTCTCCTACTGGAGTTCTTGAGGACTACTTAAGGACCTTAGAATCCGAAGAAACTGTTTCTTCAAAAGCCAGCACTTCTGAATTTGAGGACCGTAAACTCTCAAAACCCTCTTCTCGATGGGCCGGTTTCTTCAAATTACTCAAAAATAAATCAAAGAGGCATTTAGGCACTTTGCATCCTCTCAATGCCCTAAAACTATCTAAAAGATTTAGCTGTAGTCTAAGAGAAGAAATTACTCCCATTGCCGATACTGATTTGAAGAGGAACTTCACCCTTTCTGAATTACAAACAGCAACCCATAATTTCTCTCGAGAGAATCTTGTTGGAAAGGGTGGTTATGCTGAGGTATATAAGGGGTGTTTGAGAGATGGGCAACTTGTTGCAATTAAGCGACTCACACGGGGTTCGCCAGAAGAGAAAATTGGTGATTTTTTATCCGAGCTCGGGGTGATGGCCCATGTTAACCACCATAATACTGCTAAATTGATTGGGTATGGGGTTGAAGGAGGAATGCACCTTGTTCTTGAGCTCTCTCCCCATGGTAGTTTAGCTTCTTTCCTTCATGCAAAATGGCTGCCAGAGAACTGGACTCACCACACTGTGACAAAATTTGAAGGCACATTTGGATATCTTGCTCCCGAGTACTTAATGCATGGCATAGTAGACCAAAAAACTGATGTTTTCTCATTTGGTGTACTGCTCTTGGAACTTATCAGTGGACGTCGAGCTCTAGATTACTCGCAGCAAAGCCTAGTCATGTGGGCAAAACCACTACTGAAGAAGAACAAGATTAGAGAGCTTGTTGATCCTTCACTTGCTAATGACTACAACTCATTACAGATGAATCTAATGGTGTTGGCTGCCCTTTTATGCGTCCATCATTCTTCAATACGGCGTCCTCAAATGAGCCAGGCATGTGATTATCTCGTTGTTCAACTTCTTAAAGGCAACCACGGTAGCTTGGAACTGGTGATCAAATGCAGAAAGACATCATTTTGGAAGAGGTACTATGAAGACCTTTTCAATGACCATAAAAGCGCGGCTTAA

Network for GWHGAAZE009833

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	114	199	5.60E-13
PF00069.26	Pkinase	208	315	1.90E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.316
	SRR3591706	second leaf	3.138
	SRR3591707	mature leaf	0.650
	SRR3591708	Shoot apex	4.659
	SRR3591709	Stem	16.349
	SRR3591710	White floral bud	7.453
	SRR3591711	White flower	0.842
	SRR3591712	Green floral bud	0.136
	SRR3591713	Yellow flower	2.168
SRP173429	SRR8316895	Juvenile bud stage	1.226
	SRR8316896	Juvenile bud stage	1.050
	SRR8316897	Juvenile bud stage	0.926
	SRR8316894	Third green stage	1.603
	SRR8316900	Third green stage	3.334
	SRR8316901	Third green stage	4.234
	SRR8316898	Complete white stage	3.623
	SRR8316899	Complete white stage	2.537
	SRR8316903	Complete white stage	6.557
	SRR8316902	Silver flowering stage	0.683
	SRR8316904	Silver flowering stage	1.132
	SRR8316905	Silver flowering stage	0.448
	SRR8316906	Gold flowering stage	1.233
	SRR8316907	Gold flowering stage	1.884
	SRR8316908	Gold flowering stage	2.681
SRP132670	SRR6706286	Control	1.165
	SRR6706287	Light intensity 50%	1.792
	SRR6706288	Light intensity 20%	1.615
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.362
	CNS0095593	Slightly white alabastrum(diploid) 2	0.439
	CNS0095594	Slightly white alabastrum(diploid) 3	1.159
	CNS0095595	Whole white alabastrum(diploid) 2	0.826
	CNS0095596	Whole white alabastrum(diploid) 3	0.958
	CNS0095597	Whole white alabastrum(diploid) 4	1.003
	CNS0095598	Silvery flower (diploied) 1	0.083
	CNS0095599	Silvery flower (diploied) 2	0.166
	CNS0095600	Silvery flower (diploied) 3	0.293
	CNS0095601	Golden flower (diploid) 1	0.196
	CNS0095602	Golden flower (diploid) 2	0.372
	CNS0095603	Golden flower (diploid) 3	0.215
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.988
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.681
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.132
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.273
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.428
	CNS0095610	Silvery flower (tetraploid) 1	0.800
	CNS0095611	Silvery flower (tetraploid) 2	1.041
	CNS0095612	Silvery flower (tetraploid) 3	1.200
	CNS0095613	Golden flower (tetraploid) 1	0.314
	CNS0095614	Golden flower (tetraploid) 2	2.121
	CNS0095615	Golden flower (tetraploid) 3	2.295
CRA001975	CRR073297	Stem 1	1.570
	CRR073298	Stem 2	2.051
	CRR073299	Stem 3	0.678
	CRR073300	Leaf 1	1.111
	CRR073301	Leaf 2	1.801
	CRR073302	Leaf 3	1.516
	CRR073303	Juvenile bud 1	0.502
	CRR073304	Juvenile bud 2	1.105
	CRR073305	Juvenile bud 3	0.580
	CRR073306	Third green 1	1.069
	CRR073307	Third green 2	0.642
	CRR073308	Third green 3	0.866
	CRR073309	Second white 1	0.345
	CRR073310	Second white 2	0.169
	CRR073311	Second white 3	0.025
	CRR073312	Silver flowering 1	1.133
	CRR073313	Silver flowering 2	0.175
	CRR073314	Silver flowering 3	0.026
	CRR073315	Gold flowering 1	0.567
	CRR073316	Gold flowering 2	1.502
	CRR073317	Gold flowering 3	0.632
	CRR073318	Tawny withering 1	1.724
	CRR073319	Tawny withering 2	0.887
	CRR073320	Tawny withering 3	2.987