Detail information of GWHGAAZE009840


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002301652.20hypothetical protein POPTR_0002s23150g [Populus trichocarpa]
Swissprottr|O82265|SCC3_ARATH0Sister-chromatid cohesion protein 3
trEMBLtr|B9GUB7|B9GUB7_POPTR0Uncharacterized protein {ECO:0000313|EMBL:EEE80925.2}
TAIR10AT2G47980.10sister-chromatid cohesion protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene118369961118395122-
GWHAAZE00000002mRNA118369961118395122-
GWHAAZE00000002exon118369961118370567-
GWHAAZE00000002exon118372219118372343-
GWHAAZE00000002exon118372428118372693-
GWHAAZE00000002exon118373160118373294-
GWHAAZE00000002exon118378785118378891-
GWHAAZE00000002exon118380176118380320-
GWHAAZE00000002exon118380449118380652-
GWHAAZE00000002exon118380728118380865-
GWHAAZE00000002exon118381228118381389-
GWHAAZE00000002exon118391126118391299-
GWHAAZE00000002exon118392035118392162-
GWHAAZE00000002exon118392244118392380-
GWHAAZE00000002exon118392491118392669-
GWHAAZE00000002exon118392764118392908-
GWHAAZE00000002exon118393006118393242-
GWHAAZE00000002exon118393333118393496-
GWHAAZE00000002exon118393692118393784-
GWHAAZE00000002exon118393925118394037-
GWHAAZE00000002exon118394502118394739-
GWHAAZE00000002exon118394882118395122-
GWHAAZE00000002five_prime_UTR118394927118395122-
GWHAAZE00000002CDS118394882118394926-
GWHAAZE00000002CDS118394502118394739-
GWHAAZE00000002CDS118393925118394037-
GWHAAZE00000002CDS118393692118393784-
GWHAAZE00000002CDS118393333118393496-
GWHAAZE00000002CDS118393006118393242-
GWHAAZE00000002CDS118392764118392908-
GWHAAZE00000002CDS118392491118392669-
GWHAAZE00000002CDS118392244118392380-
GWHAAZE00000002CDS118392035118392162-
GWHAAZE00000002CDS118391126118391299-
GWHAAZE00000002CDS118381228118381389-
GWHAAZE00000002CDS118380728118380865-
GWHAAZE00000002CDS118380449118380652-
GWHAAZE00000002CDS118380176118380320-
GWHAAZE00000002CDS118378785118378891-
GWHAAZE00000002CDS118373160118373294-
GWHAAZE00000002CDS118372428118372693-
GWHAAZE00000002CDS118372219118372343-
GWHAAZE00000002CDS118370326118370567-
GWHAAZE00000002three_prime_UTR118369961118370325-
Transcript Sequence

Network for GWHGAAZE009840

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08514.12STAG1682751.30E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06671STAG1_2, SCC3, IRR1 Cell cycle map04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.771
SRR3591706second leaf19.443
SRR3591707mature leaf25.974
SRR3591708Shoot apex30.375
SRR3591709Stem30.177
SRR3591710White floral bud28.657
SRR3591711White flower35.004
SRR3591712Green floral bud24.276
SRR3591713Yellow flower32.782
SRP173429 SRR8316895Juvenile bud stage 18.608
SRR8316896Juvenile bud stage 22.093
SRR8316897Juvenile bud stage 12.270
SRR8316894Third green stage 10.779
SRR8316900Third green stage 22.576
SRR8316901Third green stage 21.374
SRR8316898Complete white stage 7.713
SRR8316899Complete white stage 29.064
SRR8316903Complete white stage 16.572
SRR8316902Silver flowering stage11.281
SRR8316904Silver flowering stage17.780
SRR8316905Silver flowering stage7.592
SRR8316906Gold flowering stage 27.651
SRR8316907Gold flowering stage 25.899
SRR8316908Gold flowering stage 30.216
SRP132670SRR6706286Control16.279
SRR6706287Light intensity 50%16.533
SRR6706288Light intensity 20%16.939
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.322
CNS0095593Slightly white alabastrum(diploid) 214.552
CNS0095594Slightly white alabastrum(diploid) 316.112
CNS0095595Whole white alabastrum(diploid) 213.299
CNS0095596Whole white alabastrum(diploid) 311.596
CNS0095597Whole white alabastrum(diploid) 413.058
CNS0095598Silvery flower (diploied) 120.504
CNS0095599Silvery flower (diploied) 218.984
CNS0095600Silvery flower (diploied) 326.322
CNS0095601Golden flower (diploid) 118.119
CNS0095602Golden flower (diploid) 227.301
CNS0095603Golden flower (diploid) 326.156
CNS0095604Slightly white alabastrum(tetraploid) 118.203
CNS0095605Slightly white alabastrum(tetraploid) 215.890
CNS0095606Slightly white alabastrum(tetraploid) 333.326
CNS0095607Whole white alabastrum(tetraploid) 111.106
CNS0095608Whole white alabastrum(tetraploid) 28.986
CNS0095609Whole white alabastrum(tetraploid) 321.140
CNS0095610Silvery flower (tetraploid) 125.417
CNS0095611Silvery flower (tetraploid) 225.470
CNS0095612Silvery flower (tetraploid) 321.064
CNS0095613Golden flower (tetraploid) 114.993
CNS0095614Golden flower (tetraploid) 221.911
CNS0095615Golden flower (tetraploid) 322.903
CRA001975CRR073297Stem 118.951
CRR073298Stem 217.539
CRR073299Stem 314.939
CRR073300Leaf 116.121
CRR073301Leaf 213.705
CRR073302Leaf 312.419
CRR073303Juvenile bud 110.810
CRR073304Juvenile bud 27.033
CRR073305Juvenile bud 312.189
CRR073306Third green 14.164
CRR073307Third green 23.457
CRR073308Third green 34.600
CRR073309Second white 14.337
CRR073310Second white 210.120
CRR073311Second white 38.490
CRR073312Silver flowering 17.257
CRR073313Silver flowering 25.406
CRR073314Silver flowering 35.844
CRR073315Gold flowering 18.349
CRR073316Gold flowering 216.023
CRR073317Gold flowering 36.460
CRR073318Tawny withering 113.043
CRR073319Tawny withering 212.928
CRR073320Tawny withering 314.200